- Probe CUST_18002_PI390587928
- Source Contig U35_12018
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_18002_PI390587928 | Hv_44K_v2 | TCAATCTTGAGTCTGACATTGTGGATCTGTCCATGTCCATCGACACAACAAAGAGTGACG | 581 | GeneList: orange MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.305 | 0.999 | 2.458 | 2.194 | 0.803 | 1.146 |
| Raw | 5.842 | 36.255 | 78.789 | 116.583 | 14.132 | 22.115 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK374531 | 3118 | 2e-24 | 2230 - 2289 | 100 | 60 / 60 | plus | ABC20523 |
| MLOC | MLOC_61713.1 | 2581 | 2e-24 | 1622 - 1681 | 100 | 60 / 60 | plus | ABC20523 |
| MLOC | MLOC_61713.2 | 1885 | 2e-24 | 1604 - 1663 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_40340.2 | 2469 | 8e-25 | 1430 - 1489 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_40340.1 | 2611 | 8e-25 | 1572 - 1631 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC47898 | 624 | 3e-25 | 524 - 583 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC47804 | 666 | 1e-23 | 588 - 648 | 98 | 60 / 61 | plus | |
| Harvest35 | U35_12018 | 682 | 3e-25 | 582 - 641 | 100 | 60 / 60 | plus |
Contig Sequence (682 bp)
>U35_12018 682 Hv_44K_v2 GCCGGTTTCCAGGGCTTCGTCAAACGGCAAAGTTTCAGAGAACAGAGGGCTCCGAAGCAC ACAAGCCGATACCGGTTGTGCAAGAATGCCGGTGGTAGATGCCAAATGTTCGGAAGCCGA ACCTTGTGCCATGGGTTCCACATCTGAGAAAGAGGAGTTTAGGAGGCTGTTGAAAGCAAA GGTCAATGAGCTTGGTCTGTCAGATAGGGTCGAACCAAGTGATGGTCATTCGGCAAACTT GACTGTGTCGGTGCTCCAAGAGCTCATTTCTGCCCTTACCAATGACACAAACACCTCAGC ATCCCAAACTAGTAACTATTCGGATTCATCAGCTCCTCTGAATAATGCTGAGACTGTATA CAATTCCAATGTTCAATCACCTGACTTTCACAAGCGTTATCAGGATGACCAAGGGGCTGA TTCTTCTGCTACATGCACAAATGATGAGCCCAATCAGCCGAGCCCAACATCAGTCCTCGA AGCATGCTTCTCAAATGATGCTTCCTCTGTTGGAAGTCCAACTGAAAATATCGAGAGTAC AGAATTCTTTGTTTCAATGGAGAACAAAATGGAAGATCTCTTCAATCTTGAGTCTGACAT TGTGGATCTGTCCATGTCCATCGACACAACAAAGAGTGACGATCGCGGCGGCAGTGCTGA AAACCATATGTTCAGAGTTCTC
Homology of Contig U35_12018 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os01g04160.1 | 886 | 1e-77 | protein|expressed protein |
| Brachypodium v1_2 | Bradi2g02210.1 | 861 | 2e-101 | |
| Arabidopsis v10 | None |