barSeed - Barley Seed Development Database

Probe CUST_18001_PI390587928

Source Contig U35_27980

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18001_PI390587928	Hv_44K_v2	GTCACCTTTGAAGGAATAGCTATTCTTACACCAAGAGGACGATATGCTGTTGATCTTCAT	736	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_6673.3	2457	2e-24	1492 - 1551	100	60 / 60	minus	ABC04013
MLOC	MLOC_6673.2	2451	2e-24	1530 - 1589	100	60 / 60	minus	ABC04013
MLOC	MLOC_6673.1	2461	2e-24	1532 - 1591	100	60 / 60	minus	ABC04013
MLOC	MLOC_6673.5	1529	2e-24	1322 - 1381	100	60 / 60	minus	ABC04013
MLOC	MLOC_6673.4	2298	2e-24	1379 - 1438	100	60 / 60	minus	ABC04013
JLOC1	JLOC1_4357.2	2353	8e-25	826 - 885	100	60 / 60	plus
JLOC1	JLOC1_4357.1	2122	8e-25	636 - 695	100	60 / 60	plus
Harvest21	ABC22336	799	3e-25	737 - 796	100	60 / 60	plus
Harvest35	U35_27980	799	3e-25	737 - 796	100	60 / 60	plus

Contig Sequence (799 bp)

>U35_27980 799 Hv_44K_v2
GAAGCAACCGAGGCGCCCGTGTTGGCTTCGCCGAGGAGAAGCGCCACGGGAGAGGCGGGG
CGGGGCGGTCGAGCCGGAGGGGCTTGCGCGCGGCGGCGGGGGCGGAGATGACGGACGGCC
CCACTTCAACAACATTCTCCTCGGGGGCCGCGCCGGCACGAACCTTGGTCAGTTTAAAGT
GCACTCTGGAGGGCTTGCATGGAAGAGACAAGGTGGAGGAAAGACCATTGAGATCGATAA
AGCTGATTTAACTTCTGTGACATGGATGAAAGTCCCCAGGGCATATCAGCTTGGAGTCAG
AGTCAAAGATGGCCTGTCCTACACATTTATTGGCTTCCGCGAACAGGATGTAAGCAGCCT
GATCAACTTTATGCAAAAGAATATGGGCATTTCACCAGATGAAAAGCAGTTATCTGTTGG
TGGTCACAACTGGGGAATGATTGATATAGATGGAAGCATGCTTACCTTTATGGTTGGTTC
GAAGCAAGCATTTGAATTTTCTCTAGCAGACGTTTCACAAACGCAGTTGCAAGGCAAAAC
AGATGTTCTCTTGGAGTTCCATGTCGATGACACTACTGGTGCTAATGAGAAAGATTCGCT
CATGGATATGAGTTTTCATGTACCTACATCAAATACTCAATTTCCTGGAAACGAGAATCG
CACTTCGGCTCAGATACTGTTAGAGGCAATACTTGAAAGGGCTGATACTAGTTCTGGTTC
TTCTGGAGAGGCAGTTGTCACCTTTGAAGGAATAGCTATTCTTACACCAAGAGGACGATA
TGCTGTTGATCTTCATCTT

Homology of Contig U35_27980 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g08970.1	642	2e-126	protein\|SSRP1-like FACT complex subunit, putative, expressed
Brachypodium v1_2	Bradi2g33580.1	644	2e-113
Arabidopsis v10	AT3G28730.1	646	1e-97	\| Symbols: ATHMG, SSRP1, NFD, HMG \| high mobility group \| chr3:10784954-10788498 FORWARD LENGTH=646