barSeed - Barley Seed Development Database

Probe CUST_18000_PI390587928

Source Contig U35_12019

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18000_PI390587928	Hv_44K_v2	AATATAAACCTGGAAGGATTCCCAAGGAAGACCGCCGGATACGACTTTGATAATAACAGG	567	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.169	1.124	1.162	0.818	0.478	0.468
Raw	287.663	403.066	385.321	397.903	87.355	94.444

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60439.2	3714	2e-24	2326 - 2385	100	60 / 60	plus	ABC00383 ABC14230
MLOC	MLOC_60439.1	4178	2e-24	2707 - 2766	100	60 / 60	plus	ABC00383 ABC14230
JLOC1	JLOC1_39410.1	4153	8e-25	2704 - 2763	100	60 / 60	plus
Harvest21	ABC23199	627	3e-25	568 - 627	100	60 / 60	plus
Harvest35	U35_12019	627	3e-25	568 - 627	100	60 / 60	plus

Contig Sequence (627 bp)

>U35_12019 627 Hv_44K_v2
GAAAAGATACCGAAAACAAGCTCTAAGAAGAAATTAGATAAGGTGCAGAAACCTTTGAAT
AGTATGGATGGTAGCCTTGGGAATGTCAATTTTGACGACACTGATGATTCTGCTGCAAGA
AAAAGGGGTAGGCATGGGGGATCTTCTCTTGATGGGAAAAAGCACAAGCGCTCAAAGGAT
CCTAATATTGATGCAAATCCCATGAATTTGACCAAAGGTGTCAAAGGAAATGTTAACCAT
AACATGATGATGCCTCTCCCTGAATGCACTGAGACTAATGGCAAGCCACCAATTTTGCAA
AGAAACAGTGCTGAGAAATCATCTCCAAAAAAGGTGCTCCAGAGAGAGCATTCTGATCTC
GAGTTGGGTGAACTTCGTGAGGGTCCTTTGGAAAATGACAACGGGAGGACAAGGAAACAA
TTTGAGAGGAATAGTTCTTCTAAGTCGCTTGATGGTAAAGCAACTAATGTAGATAATTTC
TATCCCAGTATGAATAGCAGGAAGGTTGCTCTATCTGCTTCCCATGATCAGAGGAGACCA
TCACCACAAGAATTAAATACTCGTGGTAATATAAACCTGGAAGGATTCCCAAGGAAGACC
GCCGGATACGACTTTGATAATAACAGG

Homology of Contig U35_12019 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g08820.1	1179	2e-71	protein\|expressed protein
Brachypodium v1_2	Bradi1g72092.1	1231	5e-89
Arabidopsis v10	None