barSeed - Barley Seed Development Database

Probe CUST_17971_PI390587928

Source Contig U35_21594

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17971_PI390587928	Hv_44K_v2	TGATGAAACATTCGAATGCACTGATATAGAAGGGCAGCAGAAAATGAGGAGAGGGCAACA	826	GeneList: darkolivegreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.281	0.559	0.918	1.413	1.133	1.646
Raw	362.431	1159.684	1647.050	3910.600	1124.719	1756.847

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_12729.1	2343	2e-24	2235 - 2294	100	60 / 60	plus	None
JLOC1	JLOC1_8552.5	2678	8e-25	2333 - 2392	100	60 / 60	plus
JLOC1	JLOC1_8552.4	2629	8e-25	2284 - 2343	100	60 / 60	plus
JLOC1	JLOC1_8552.3	2644	8e-25	2299 - 2358	100	60 / 60	plus
JLOC1	JLOC1_8552.2	2672	8e-25	2327 - 2386	100	60 / 60	plus
JLOC1	JLOC1_8552.1	3501	8e-25	3156 - 3215	100	60 / 60	plus
Harvest21	ABC50315	614	3e-25	45 - 104	100	60 / 60	minus
Harvest21	ABC16396	883	1e-23	827 - 883	100	57 / 57	plus
Harvest35	U35_21594	930	3e-25	827 - 886	100	60 / 60	plus

Contig Sequence (930 bp)

>U35_21594 930 Hv_44K_v2
GCTAATGGATGGTTTGTATTTCCACAAGATGGGAAATCAGATCATATATGCAGGAACTAT
GAAACAGAGAATGGCAAAAATACCTCATTTTGCTTGGGGAAAACAAAACCTCTTCTTGCA
TCGGATGATGCTATCATGGAAAATGAAGAAGACCAAACAAGGTTCCATCTGGCAGTTGCA
GACGTTAATGATTCTTGTTTGGATGCATCTGCTAGTCGGCGGCGGACTGCCTCAGAGATT
AAGCTTCTCATGTTCTCCAGGTGCAAATGGCATGCAAAGCAGATGTGGGAGCTGAATGAC
AAGGGTAACCTTGTGAGCAGCTATTCAAGATTATGTGCCACGGTGGAATCCAGCAAGGAA
GCAGTAGGTATTACTGGATATCGTGCATGGATTGCAACTGGAAGTAAAGGGGAAATCTAC
CTCGCATTCTTCAACCTTGACTCGACGAGCAGGAAGATAACCACAAGAATATCAGACCTG
GAAAAGGTTCTTGGGACGGCCTTTGTACGAAAACACTCATGCAGCTGCAGTGACGTTTGG
AGCGGGAGGAATCTTGGTCTCCTCAAGGAAGAGATTTCAGCGGCCGTGAATCCACACGGT
TGCGTGGTGTTCGAACTTATGTGTTGAGGTTTGCTGCAGACTTCTCACAGTGGGAATAAT
CTTGGGAACCTACTGCAATCCTATGATATGATATGATGTAAGCCTACCCTGAACAGCGTG
AACCTTGAATCCTATTGGGTCGGCGCTTGAAAGCGGTCGAGGTGACCGTCAAACCGTACC
CATGCTAGAACGGGATGGGTTTGAGTAATTATGCATCAACTCAGGATGATGAAACATTCG
AATGCACTGATATAGAAGGGCAGCAGAAAATGAGGAGAGGGCAACAGAGGAGCTGTACTG
ACTGGTCTCTTCTGGTGCATTTTGCAAACA

Homology of Contig U35_21594 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g33420.1	650	4e-99	protein\|glycosyl hydrolase family protein 27, putative, expressed
Brachypodium v1_2	Bradi2g13530.1	645	4e-120
Arabidopsis v10	None