barSeed - Barley Seed Development Database

Probe CUST_17966_PI390587928

Source Contig U35_21599

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17966_PI390587928	Hv_44K_v2	AATCGCCCATCAATTTCAATCAGCCGAGGAGAAAAGGAAAGGAAAAGATAGAGAGGCGAC	44	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.005	2.182	0.986	0.800	0.624	0.836
Raw	60.301	87.748	38.575	43.725	13.245	19.663

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366247	3268	2e-24	24 - 83	100	60 / 60	plus	ABC06354
MLOC	MLOC_20888.1	214	2e-24	127 - 186	100	60 / 60	minus	None
JLOC1	JLOC1_14482.1	219	8e-25	127 - 186	100	60 / 60	minus
Harvest35	U35_21599	496	3e-25	45 - 104	100	60 / 60	plus

Contig Sequence (496 bp)

>U35_21599 496 Hv_44K_v2
TCGAGCACTGTTGGCCTACCGGGACGACGGCCCATCCACTCCAGAATCGCCCATCAATTT
CAATCAGCCGAGGAGAAAAGGAAAGGAAAAGATAGAGAGGCGACGGCCGCGAAGCGCACG
CAAATATCCTCCTCTGTCTGTCCAACCATCCTCTCCTCCTATCCTGCTAGCGGCGAGCCA
GGACCGGCTGCCGGCGCGGCCATGCATAACAGGGCGGGCGGCGGCGGGGCGGGGGAGATC
GTGGAGGCGGGAGAGAGGGTCGTGCCGCACAGCGGGCCTCTGGGCGGGAAGCGGTCCGCC
ATGCGCAAGAGCGCGCGGTTCGCCGAGTCCGTGTCGGCGCCGCTCACGGCGCCGCACGGG
GCGCCGCGCGGCGGGGGCGGGAACGACGACGACGACGACTACGTGGAGATCACCCTGGAC
GTGAGGGACGACTCGGTGGCGGTGCACAGCGTGAAGCCGGCGGCGGGCGGGGAGGACTNC
GACGTGAAGCTGCTGG

Homology of Contig U35_21599 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None