- Probe CUST_17958_PI390587928
- Source Contig U35_19284
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_17958_PI390587928 | Hv_44K_v2 | ATTGTGCCTTCCATCAGGCGACACCGCCTCAGAAAAGAAGTTTGTTGTTGGAATTGTACT | 653 | GeneList: cyan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.884 | 1.147 | 1.210 | 0.805 | 0.576 | 0.729 |
| Raw | 525.651 | 438.344 | 465.303 | 446.729 | 120.905 | 168.627 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK356613 | 2450 | 2e-24 | 642 - 701 | 100 | 60 / 60 | plus | ABC07020 ABC07021 |
| MLOC | MLOC_6242.3 | 2324 | 2e-24 | 1601 - 1660 | 100 | 60 / 60 | minus | ABC07020 ABC07021 |
| MLOC | MLOC_6242.2 | 1798 | 2e-24 | 1729 - 1788 | 100 | 60 / 60 | minus | ABC07020 ABC07021 |
| MLOC | MLOC_6242.4 | 2020 | 2e-24 | 1304 - 1363 | 100 | 60 / 60 | minus | ABC07020 ABC07021 |
| MLOC | MLOC_6242.1 | 2444 | 2e-24 | 1730 - 1789 | 100 | 60 / 60 | minus | ABC07020 ABC07021 |
| JLOC1 | JLOC1_4061.2 | 2635 | 8e-25 | 665 - 724 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_4061.1 | 2618 | 8e-25 | 658 - 717 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC10857 | 1005 | 3e-25 | 659 - 718 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_19284 | 729 | 3e-25 | 654 - 713 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_19285 | 1050 | 1e-23 | 704 - 763 | 98 | 59 / 60 | plus |
Contig Sequence (729 bp)
>U35_19284 729 Hv_44K_v2 GGTCCTCCGCCGCTTGTAAACCCTCGTTCGCCGACACCTCGACCTCGACCTCGACCTCGC CATGGCCGGCGGCGGCGACCACCCGGGCGCCAACAAGCGGAAGCGCGAGGCCGCGGGGAG GCCCAAGGTGCCGTCCAAGGGCGCCGCCGACGCCACCAAGCGGAAGAAGACCTATGACCC CCCCGCCCCCTCCGCCAAGCCGCAGCCCGTCACCGCCAAGGACAAGCGGGTCGCAGCCAA GGAAATGTCCGAGTCGAGGAAGATGAAGAGGAAGCCCAATTACAACCTCGAGAAGGAACT GGCAGTACTTTGGGAAAAGATGAGATGCCGTGATGTGAGCAAGGAGAATAGATCCAAGCT AGTAACTGAGGCTCTCCGTAAAATGGATGGCAAATATTTCGAAATTGCTGGATCCCATGT AACCGCACGTGTTCTTCAAACATGTGTCAAGTGGTGCTCACAGTCAGAGAGGGATGCTGT TTTTGCTGCCCTGCAGCCACATTTGCTCCATCTCTCTCGCAAGAAATACGCTGTTTTTCT TGTGAAGAAGCTCATAAAACTTGCCACTAAAAAACAGCTTGCCTTGTTCATCTCTTCCCT TCATGGTCATGTCGCTTCTCTACTTCGTCACACAATAGGAGCTGCAGTCATTGATTGTGC CTTCCATCAGGCGACACCGCCTCAGAAAAGAAGTTTGTTGTTGGAATTGTACTCCACTGA GCTTCAGCT
Homology of Contig U35_19284 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os03g61560.1 | 660 | 5e-99 | protein|expressed protein |
| Brachypodium v1_2 | Bradi1g03030.1 | 660 | 9e-113 | |
| Arabidopsis v10 | AT3G16810.1 | 641 | 2e-62 | | Symbols: APUM24, PUM24 | pumilio 24 | chr3:5723436-5727539 REVERSE LENGTH=641 |