barSeed - Barley Seed Development Database

Probe CUST_17957_PI390587928

Source Contig U35_19285

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17957_PI390587928	Hv_44K_v2	TTCGTCAGTTAACCCCCCATCTTACTCAAGGGTCATCTGTCGTAGATGAAGAGGAACTAT	982	GeneList: cyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.847	1.171	1.100	0.696	0.450	0.482
Raw	996.449	913.135	810.124	746.968	182.763	215.018

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356613	2450	7e-23	921 - 980	98	59 / 60	plus	ABC07020 ABC07021
MLOC	MLOC_6242.3	2324	7e-23	1322 - 1381	98	59 / 60	minus	ABC07020 ABC07021
MLOC	MLOC_6242.2	1798	7e-23	1450 - 1509	98	59 / 60	minus	ABC07020 ABC07021
MLOC	MLOC_6242.4	2020	7e-23	1025 - 1084	98	59 / 60	minus	ABC07020 ABC07021
MLOC	MLOC_6242.1	2444	7e-23	1451 - 1510	98	59 / 60	minus	ABC07020 ABC07021
JLOC1	JLOC1_4061.2	2635	4e-23	944 - 1003	98	59 / 60	plus
JLOC1	JLOC1_4061.1	2618	4e-23	937 - 996	98	59 / 60	plus
Harvest21	ABC10857	1005	3e-25	938 - 997	100	60 / 60	plus
Harvest35	U35_19285	1050	3e-25	983 - 1042	100	60 / 60	plus

Contig Sequence (1050 bp)

>U35_19285 1050 Hv_44K_v2
AAGAACTGCCCCCTAGACTAGAACGAACCTATCTGGGCATCCTCCTCCGGTGCTGCGACC
AGTAAACCCTCGTTCATCCTCCCCCGTTCGCCGACGCCGCCTCGTGTTCCCATGGCCGGA
GGTGGTGACCACCCGGGCGCCAACAAGCGGAAGCGCGAGGCCGCGGGGAGGCCCAAGGCG
CCGTCCAAGGGAGGCGGCGACGCCACCAAGCGGAAGAAAACCCATGACGCCCCTGCCGCC
AAGGCCAAGCCGCAGCCCGTCACCGCCAAGGGCAAGCGGGTCGCCGCCAAGGAAATGTCC
GAGTCGAGGAAGATGAAGAGGAAGCCCAATTACAACCTCGAAAAGGAACTGGCAGTACTA
TGGGAAAAGATGAGATGCCGTGATGTGAGCAAGGAGAATAGATCCAAGCTAGTGACTGAG
GCTCTCCGTAAAATGGATGGCAAATATTTTGAAATTGCTGGATCCCATGTAACCGCACGT
GTTCTTCAGACATGTGTGAAGTGGTGCTCACAGCCAGAGAGGGATGCTGTTTTTGTTGCC
CTGCAGCCACATTTGCTCCATCTCTCTCGCAAGAAATACGCTGTTTTTCTTGTGAAGAAG
CTCATAAAACTTGCCACTAAAAAACAGCTTGCCTTGTTCATCTCTTCCCTTCATGGTCAT
GTCGCTTCTCTACTTCGTCACACAATAGGAGCTGCAGTTGTTGATTGTGCCTTTCATCAG
GCGACACCGCCTCAGAAAAGAAGTTTGTTGTTGGAATTGTACTCCACTGAGCTTCAGCTG
TTCAAGGACCTGACTGAACAAAAATCATGCAGTTTGTTAGAAACAATTTCCAAGCTTGGA
CTACAGAAATCATCTGTCCTGCAGTATATGACTACTGTTATCCAGCCAGTTTTGGAAAAG
GGTATTGTTGAGTATTCCATAGTACACACGGTCATATTGGAGTACTTAACAATTGCGGAT
AAGACATCAGCCTCGGACGTGATTCGTCAGTTAACCCCCCATCTTACTCAAGGGTCATCT
GTCGTAGATGAAGAGGAACTATCAGGTGTC

Homology of Contig U35_19285 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g61560.1	660	6e-138	protein\|expressed protein
Brachypodium v1_2	Bradi1g03030.1	660	2e-161
Arabidopsis v10	AT3G16810.1	641	2e-82	\| Symbols: APUM24, PUM24 \| pumilio 24 \| chr3:5723436-5727539 REVERSE LENGTH=641