barSeed - Barley Seed Development Database

Probe CUST_17954_PI390587928

Source Contig U35_19287

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17954_PI390587928	Hv_44K_v2	ATTCAATGGTTGTTTGGTTTCATGCTCATCATGATGCCCCAACATTAGACAACTAAAAAA	842	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.169	1.313	1.290	1.019	0.354	0.390
Raw	398.951	706.070	601.965	748.598	90.543	109.213

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363364	1589	7e-23	1515 - 1571	100	57 / 57	plus	ABC11035
MLOC	MLOC_20735.1	1438	7e-23	27 - 83	100	57 / 57	minus	ABC11035
JLOC1	JLOC1_14376.1	1467	4e-23	1380 - 1436	100	57 / 57	plus
Harvest21	ABC11035	913	3e-25	843 - 902	100	60 / 60	plus	ABC11035
Harvest35	U35_19287	913	3e-25	843 - 902	100	60 / 60	plus

Contig Sequence (913 bp)

>U35_19287 913 Hv_44K_v2
GCTGGTGTTGTTACTCCTGCATGCTTTGAATGACTTCAAGGTGTCCTGATGAAATAGTCA
GAAGAATTCGTGTGAGTGTTTCTTCTTATGATCCAAGTTGGCGAGGAAAGTTACTGGAGA
CTTACGACACACACGCTGATATTTATCGAATTGCCCCTGCCTGCTGGATGCCAGATTGGG
CGGAAATGGCATCCTCACTTAATGAGCTTTCAGACTCCGAAGTCCTGCTTCAGTGCTCCA
CCTCTCCAGCTGCAGAACCACCTCATTTTGTGGAAACTGAGAGAAGGATATGGAAATACT
TGATCGAGAACCCAGACTGGGAAGACGCATTTCCAAAGTACAAGCCCCGGGTCTTCCATT
GGACCAATGATGGAAGGTGGTCAAGGCACTCTTAGCATCATCATTTTCCTGTCTTGTCGT
CCATTGGTGCTCTACAAGCGGAACGGTGACAAATTATGGTCACACCAGCACTTATACGAT
CCCAGTCATTTCCTCCATTTCCATACACCTTTCATCTTCAGTTATCTCATGCATTTGCCA
TGGGTGATTCAAGATTATTCGGTTCTTCCGTAAATGGATGCCGAGAAACCGGTCTGAAGT
TGATGCATTAAGCACGGTTTGTGTGTCGTGTGGTAGATTCATTGTTGGTCCATACCTGAC
CTCTGAAATTCGATTTGGTGGGTTAAATGTTTGCATGCAACTTACATGTTGTGGTCAGAG
GCGTGGTGGTTAGGCGTTGTGTACACTAGGATGTGGGTCGGGTGATTTTATTTGTGGTGA
TTTGCAATGTTGTGTCTGAAAATATCTATACTCTAGTTTGGTCACTGTGTTCTGCTCGAA
AGATTCAATGGTTGTTTGGTTTCATGCTCATCATGATGCCCCAACATTAGACAACTAAAA
AAAAAAAAAAAAA

Homology of Contig U35_19287 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g41390.3	242	2e-74	protein\|N-terminal asparagine amidohydrolase, putative, expressed
Brachypodium v1_2	Bradi1g35910.1	339	2e-76
Arabidopsis v10	None