barSeed - Barley Seed Development Database

Probe CUST_17953_PI390587928

Source Contig U35_19288

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17953_PI390587928	Hv_44K_v2	GGCTGCTCGATCAGTCCTAGTTGTTGCTCTAATTTGTAGCAAGAAAAAGACCAAAAATAA	277	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.898	1.752	1.332	0.742	0.222	0.204
Raw	85298.967	116544.433	81826.267	67799.267	7632.407	7511.573

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_42430.1	126	2e-24	57 - 116	100	60 / 60	minus	ABC11593 ABC11594
MLOC	MLOC_30437.1	339	3e-21	145 - 204	97	58 / 60	plus	ABC11592 ABC11593 ABC11594 ABC30098
JLOC1	JLOC1_20138.1	254	2e-21	148 - 207	97	58 / 60	plus
Harvest21	ABC11592	384	3e-25	278 - 337	100	60 / 60	plus	ABC11592
Harvest21	ABC11593	429	6e-22	293 - 352	97	58 / 60	plus	ABC11593
Harvest35	U35_19288	384	3e-25	278 - 337	100	60 / 60	plus
Harvest35	U35_29970	394	6e-22	293 - 352	97	58 / 60	plus

Contig Sequence (384 bp)

>U35_19288 384 Hv_44K_v2
CAAATAGGAATCAAGGAAATAGTAAACAACTTTGTTATGGCTCCAATAGACTCAAGGTTT
TCGTGCTTGACTATGGCTCTATTGCTGATGTCAACCACTTGTTTGTCGAGTCAAGTATCA
GAGACAGATACCATAGGTATGAAAGCCAACGCATGCATGGGCCGTGAACCTTACCAGTTT
AATTGTACGCCTGGAGGCTGTGTTACTGCCTGCAAAAAATTAGGCTGCGGAACTGGGGTT
TGCCATTTAGATGGTAGTTGCTATTGCAGCTAGACGAGGCTGCTCGATCAGTCCTAGTTG
TTGCTCTAATTTGTAGCAAGAAAAAGACCAAAAATAATAAGTAATGTTGAGTTTTCTTCA
ATTCCTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_19288 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None