barSeed - Barley Seed Development Database

Probe CUST_17952_PI390587928

Source Contig U35_19289

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17952_PI390587928	Hv_44K_v2	CCTGTGCTCTCCCTTATCATTGTTTTTTAATGAAAATGGGTGTTTTATGGCTTCTCGTTT	412	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.243	2.255	1.315	0.520	0.089	0.066
Raw	17496.600	27655.890	13786.067	8617.220	542.262	429.459

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC11594	492	3e-25	413 - 472	100	60 / 60	plus	ABC11594
Harvest35	U35_19289	492	3e-25	413 - 472	100	60 / 60	plus

Contig Sequence (492 bp)

>U35_19289 492 Hv_44K_v2
GAACAAATATAGAATACAAATAGGAATCAAGGAAATAGTAAACAACTTTGTTATGGCTCC
AATCGACTCAAGGTTTTCGTGCTTGACTATGGCTCTTTTGCTGATGTCAACCACTTGTTT
GTCGAGTCAAGTATCAGAGACAGAGAGCATAGGTATGAAAGCCAACGCATGCGCGGGCCG
TGAACCTTACCAGTTCAATTGTACGCCTGGAGGCTGTGTTACTGCCTGCAAAAAACTAGG
CTGCGGAACTGGGGTTTGCCATTCAGATGGTAGTTGCTATTGCAGCTAGATGAGGCTGCT
CGATCAGTCCTAGTTGTTGCTCTAATTTGTAGTAAGAAAAAGACCGAGAATAATAAGTAA
TGTTGAGTTTTCTTCAATTCCTGAAAAAAGTTAAATAGAGATTGTTTATTTTCCTGTGCT
CTCCCTTATCATTGTTTTTTAATGAAAATGGGTGTTTTATGGCTTCTCGTTTNNNAAAAA
AAAAAAAAAAAA

Homology of Contig U35_19289 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None