- Probe CUST_1794_PI390587928
- Source Contig U35_47297
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_1794_PI390587928 | Hv_44K_v2 | AGAAACATGTGGATGACAATGCTGACATTACTTTATCATGTGCCCCTGTTGGAGAGAGCC | 490 | GeneList: lightcyan1 MasterList: Starch_synthesis_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.019 | 0.056 | 0.848 | 1.785 | 1.749 | 1.490 |
| Raw | 17.013 | 65.003 | 1012.534 | 3055.963 | 1162.261 | 1068.930 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_5173.4 | 1925 | 2e-24 | 738 - 797 | 100 | 60 / 60 | plus | ABC03390 |
| MLOC | MLOC_5173.2 | 2472 | 2e-24 | 1193 - 1252 | 100 | 60 / 60 | plus | ABC03390 |
| MLOC | MLOC_5173.1 | 2637 | 2e-24 | 1359 - 1418 | 100 | 60 / 60 | plus | ABC03390 |
| MLOC | MLOC_5173.5 | 1896 | 2e-24 | 780 - 839 | 100 | 60 / 60 | plus | ABC03390 |
| MLOC | MLOC_5173.3 | 2552 | 2e-24 | 1273 - 1332 | 100 | 60 / 60 | plus | ABC03390 |
| JLOC1 | JLOC1_3309.5 | 2154 | 8e-25 | 841 - 900 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_3309.4 | 2530 | 8e-25 | 1217 - 1276 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_3309.3 | 2524 | 8e-25 | 1211 - 1270 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_3309.2 | 2478 | 8e-25 | 1165 - 1224 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_3309.1 | 2133 | 8e-25 | 820 - 879 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC48201 | 585 | 3e-25 | 491 - 550 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC03390 | 2227 | 3e-25 | 880 - 939 | 100 | 60 / 60 | plus | ABC03390 |
| Harvest35 | U35_47297 | 585 | 3e-25 | 491 - 550 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_15499 | 2242 | 3e-25 | 895 - 954 | 100 | 60 / 60 | plus |
Contig Sequence (585 bp)
>U35_47297 585 Hv_44K_v2 CTCCTCTCCCCTCCCCTCACCACCACCACCACCACCACCCCTTCTCCCTCCCTGCATTTG ATTCGTTCATATTCATCCGTCATACTCGGCGGCGGCACCGGGACTCAGCTCTTCCCGCTC ACAAGCACAAGGGCCACACCTGCTGTTCCTATTGGAGGATGTTACAGGCTCATCGATATT CCCATGAGCAACTGCTTCAACAGTGGCATCAACAAGATATTCGTCATGACCCAGTTCAAC TCGGCATCTCTCAATCGCCACATTCACCGCACCTACCTCGGCGGGGGAATCAATTTCACT GATGGATCTGTTGAGGTATTGGCCGCGACACAAATGCCTGGGGAGGCTGCTGGATGGTTC CGCGGAACAGCGGATGCCGTCAGAAAATTTATCTGGGTGCTTGAGGACTACTATAAGCAT AAATCCATAGAGCACATTTTGATCTTGTCGGGCGATCAGCTTTATCGCATGGATTACATG GAGCTTGTGCAGAAACATGTGGATGACAATGCTGACATTACTTTATCATGTGCCCCTGTT GGAGAGAGCCGGGCATCTGAGTACGGGCTAGCGAAGTTCGACAGT
Homology of Contig U35_47297 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os05g50380.1 | 520 | 4e-115 | protein|glucose-1-phosphate adenylyltransferase large subunit, chloroplast precursor, putative, expressed |
| Brachypodium v1_2 | Bradi2g14970.3 | 492 | 2e-117 | |
| Arabidopsis v10 | AT4G39210.1 | 521 | 2e-82 | | Symbols: APL3 | Glucose-1-phosphate adenylyltransferase family protein | chr4:18260332-18263181 FORWARD LENGTH=521 |