barSeed - Barley Seed Development Database

Probe CUST_17943_PI390587928

Source Contig U35_19291

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17943_PI390587928	Hv_44K_v2	GCTGTGTTGAACAACTACTATTTGGACAGACTATGGGAATTTGAATTTTTTGCACTATCT	931	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.784	1.786	1.202	0.888	0.306	0.314
Raw	2692.277	4360.307	2539.480	2932.234	355.450	394.189

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249392.1	2046	2e-24	1962 - 2021	100	60 / 60	plus	ABC03819 ABC10418
MLOC	MLOC_13273.1	1585	2e-24	1499 - 1558	100	60 / 60	plus	ABC03819 ABC10418
JLOC1	JLOC1_8963.1	1596	8e-25	1483 - 1542	100	60 / 60	plus
Harvest21	ABC10418	1040	3e-25	50 - 109	100	60 / 60	minus	ABC10418
Harvest35	U35_19291	1040	3e-25	932 - 991	100	60 / 60	plus

Contig Sequence (1040 bp)

>U35_19291 1040 Hv_44K_v2
CCAAATTTGACTGCACTTGTGGGCGAACTTGTTGGTGCTAGACTTATTTCACATGGTGGC
AGTCTTGTAAATTTGGCCAAGCAGCCTGGTAGCACCATTCAGATACTCGGTGCAGAGAAG
GCTTTATTCAGAGCTCTGAAGACAAAACATGCTACACCTAAGTATGGTCTCATCTACCAT
GCATCCTTAATTGGTCAAGCAGCTCCAAAGCACAAGGGAAAGATTTCTCGTTCTCTAGCT
TCAAAAGCTGCTCTTGCCATCCGGTATGATGCCCTTGGTGATGGTGAACATAATTCCCTT
GGTGTTGAGAGTCGACTGAAGCTTGAAACATGGCTTCGGGTTCTCGAGGGTAAAGAACTA
GGGAGATCTGCTGGTTCCACGAAGGGAAAGCCCAAGATAGAAGTCTATGAAAAAGACAGG
AAGAACGGTCCTGGGTTAATTGCTCCTGCTAAGACGTATAATCCTTCGGCTGATCTGGTT
CTTGCGCAATCCATGGAAGAAACTCCAAAGAAGCCTGATGCAGCTTCAAAGAAGAGGAAA
CATGATGATGCTGTGACTGCACCATCAACCGAGCTTGCTGAGGAAGCAATTCAAGAGGAT
GGTGACCAGGAGGGCAAGAAGAAAAAGAAAAAGAAGTCCAAGGACGTTGAGGAGTCTCCT
GCAGTTGATACCAAGAGCGACAAGAAAAAGAAAAGAAAGTCCAAGGGGACAGAGGAGGAG
GTTGCTCCCGTGGAAACTGAGTCTGGTAAAAATGATAAGAAGAAAAAGAAAAGGCAGGCT
GATTGATGCTTCTATTCCCCAGAGAAGAAGGGAAGAAAGGCAAGTCATTTTGCGTAGGCT
TAGGTTCAGAATTTGTGTTGTGTAAACTGGAATTTCACCGGCAATTCGATGCTTGTTAGC
TATAGTATATAAACTTTGCAGGGTTCACGCAGCTGTGTTGAACAACTACTATTTGGACAG
ACTATGGGAATTTGAATTTTTTGCACTATCTATATATATACAAAAAACTTGAAGGGAAAA
TTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_19291 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g22730.1	569	7e-114	protein\|nucleolar protein NOP5-1, putative, expressed
Brachypodium v1_2	Bradi1g62430.1	561	9e-121
Arabidopsis v10	AT5G27120.1	533	1e-81	NOP56-like pre RNA processing ribonucleoprotein \| chr5:9541287-9543684 FORWARD LENGTH=533