barSeed - Barley Seed Development Database

Probe CUST_17941_PI390587928

Source Contig U35_19292

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17941_PI390587928	Hv_44K_v2	GATGCTCCAAGTTAAATTTTCGCTAGATAAGCCATTTTGGCCAGAATTTACTCTGAAGAT	1204	GeneList: purple MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.079	0.168	0.847	1.869	1.143	1.457
Raw	4.356	18.614	87.324	296.959	64.277	87.689

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_52962.1	4087	2e-24	3611 - 3670	100	60 / 60	plus	ABC10815
JLOC1	JLOC1_33982.2	3589	8e-25	3403 - 3462	100	60 / 60	plus
JLOC1	JLOC1_33982.1	1944	8e-25	1758 - 1817	100	60 / 60	plus
Harvest21	ABC10815	1292	3e-25	1205 - 1264	100	60 / 60	plus	ABC10815
Harvest35	U35_19292	1292	3e-25	1205 - 1264	100	60 / 60	plus

Contig Sequence (1292 bp)

>U35_19292 1292 Hv_44K_v2
GCCGCACAGGTATTCCGTTTCGTCCGGCCGGCCGACGCGATGCTGCGCAACAGATCGAGG
AGAGCAGGCGGCGGAGGCGGAGGCCTGATCCCTCAGCCTGAGCCCCTCGCCGCCGCCGCC
GCTGCTCAGTCTTCTTCTTCCGCGCCGGCTCCTGCGCTCGCTTCCCCGAGGCCGTACATG
GCGCTCCTGCAGGCCGGTTTCTTGGACGGCGCGGAGCAGGGGCCCTCCTCCTCCATGAGC
CCCACCTCCATTCTCGAGACCAAGCAGTTCTGCTGCTCCGCCCTGCCGCCGTTCCTGTCC
GAGAGAAGCCTCAGGAAGGCTCAGATGGAGACAGCTACTCTGGGTCCGGAGCCGGCCAGC
GTCGGCGGCCTCGCCGACGTGCTCCGGGAGCACGGCGACGCCAAGGCCGGCGGCCGGAAG
GTGGTGTTCGGGTCGCAGCTCAGGATCCAGGTCCCCTCCGGCAGGGCCGTGGAGCTGGTG
TCCTCCCCGATAGAGTTCGGCGTCAAGAACCGGGACGCGCAGCTGGCCGTGCTATCCCCG
GCCAGGAGGTTCTTGCCGGAGGTGGTGAGCTCGCCCTCCGCCCGGGTGTTCGCCGGCGGC
GTCGCCCCGGGGGAAATGGCCATGTCGGAGGACTACACGTGCGTCATCTCCCGCGGCCCC
AACCCGAGGACCATGCACATCTTCGACGACTGCATAGTCGAGAGCTGCGGGGATGTGCTC
ATGGACAAGGTGGACACCGCCGGCGACGCGGTGCCGGTGCCGGCCAGCGGTTTCTTGGGC
TCTTGCCATGCATGCCACAGGCAACTTGCAGGGCATGCCAATGATACCTTCCACCGGGAC
GGCAAAGCATTCTGCGGCGACGAGTGCCGGTACCGGGAAATGCTTTTCGAAGAGGCGGTG
GACAACCTGCGCTAGCTAGCTGAACGAGGGGAGGGATGGTGTATTTCACAGGAGAGTTTC
AGTGGTGGAGAAAGGCATATGGTGGCCCTGAATAACCGAGATGAGATTTATTTCCCATTT
CTAGTTTCTTGTCGACTTTGCAAGACTGGATGATGATTTTTGGTCATGGAGGACGGAACG
ATTCTAGTCTTTTTGCCGTGGATTAAAAGACCTTCTGCCCACTTTTGCGCAAGAGGTTGC
GCTGTTGGATATTTGATGTCCTGTGGGCTACTTGTTCATGTGGCGTGGCAGTTAACTGAA
ATTTGATGCTCCAAGTTAAATTTTCGCTAGATAAGCCATTTTGGCCAGAATTTACTCTGA
AGATTAAACTATTGGAAAAAAAAAAAAAAAAA

Homology of Contig U35_19292 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g46260.1	303	7e-124	protein\|DUF581 domain containing protein, expressed
Brachypodium v1_2	Bradi1g12960.1	310	7e-131
Arabidopsis v10	None