barSeed - Barley Seed Development Database

Probe CUST_17938_PI390587928

Source Contig U35_19294

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17938_PI390587928	Hv_44K_v2	ACTTTGCACAAGCATATGCCTTTGCAAAGCTTGTTAGCCTTCAATATACCAGGGAAAAAA	1290	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.051	1.138	1.053	0.912	0.359	0.369
Raw	386.632	651.318	528.642	742.109	99.277	112.525

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354664	1912	7e-23	1839 - 1898	98	59 / 60	plus	ABC10849
MLOC	MLOC_67627.5	2397	7e-23	1669 - 1728	98	59 / 60	plus	ABC10849
MLOC	MLOC_67627.3	2177	7e-23	1449 - 1508	98	59 / 60	plus	ABC10849
MLOC	MLOC_67627.4	2182	7e-23	1454 - 1513	98	59 / 60	plus	ABC10849
JLOC1	JLOC1_44671.8	1518	4e-23	1367 - 1426	98	59 / 60	plus
JLOC1	JLOC1_44671.7	1545	4e-23	1394 - 1453	98	59 / 60	plus
JLOC1	JLOC1_44671.6	1542	4e-23	1391 - 1450	98	59 / 60	plus
JLOC1	JLOC1_44671.5	1513	4e-23	1362 - 1421	98	59 / 60	plus
JLOC1	JLOC1_44671.4	2557	4e-23	2406 - 2465	98	59 / 60	plus
JLOC1	JLOC1_44671.3	2631	4e-23	2480 - 2539	98	59 / 60	plus
JLOC1	JLOC1_44671.2	2552	4e-23	2401 - 2460	98	59 / 60	plus
JLOC1	JLOC1_44671.1	1557	4e-23	1406 - 1465	98	59 / 60	plus
Harvest21	ABC10849	1380	3e-25	31 - 90	100	60 / 60	minus	ABC10849
Harvest35	U35_19294	1495	3e-25	1291 - 1350	100	60 / 60	plus

Contig Sequence (1495 bp)

>U35_19294 1495 Hv_44K_v2
GGGTGACGAAGAGGGACCGGAGCATGGGAGGGAAGGAGGTGGTGGTGTCTGTATCGTCTC
CTGTGCTGCCTCCGGCCAGCCGCGTCAAGGAGCCCGCAAGGAAGGTCAGGAGGAAGGAAC
CACAGGGAAGGGTCCCGGAGTGGTGGCCTGAGATGGAAACGGAGTTGGTGGAACTGGGGC
AAGAGGCGGAGAGGTGGGCGATATTGGCCAATAGATTGGTCCGAGGTGAATGCCTCAATC
ATTGACAATAGGGTTGCGGGGAAGGACTACAGATACGATGATGCAGTTCAACTAAGGCAG
CTATGCAAGATATCAGGAGTAAAGGTCTCATTTGACACAGAGAATGCACGCGATTCTTTC
TACAGGGCAACAACAGGCTTTGTTCTGGATGATTGCAGCAGAACAGCAGAAGATATGGGG
ACAGCACGAATCAATGGTGAGAATCCAAGAGATTTTCTTGCTGGTCTTTCTACGAATATT
GGGTTGGACAAGTTCCGTGCTGCCACACTTGTTTGTGCATCAGTTGCTGCTCGCACTCGT
GCGTGTGTCTTGCAATGCTGGGCTCTAGAGATTCAGGGAAAACGAGCAGAGGCACTAGAT
GAGCTTGTGAAGATTTGTAGAATTCATCGTGTATTCCCTCCAGAAGAAAACTCTGCAGAA
ATGGAAATGGTCGCTAGTGGACTTAAAAAGAATTTGGAAGTTGCAGAGAGGGTTCACCTT
CTCTCTCTATACAGGAGCGTCTGTACTACCGGTGTCAAAACTGCTGCAGAAGCTCTTGGC
CTGAGCTCGCCGGATCAATGAGAACAGGTGCAGTAGAAGGGCTCATTATTTTTGTAGTTC
CAGCTTGGCATTGTCATGCCTCGGGAAGGGCTTCAGGCCGCTGAAATATTCACAATTGAA
GCCTCTCTCATCCTTGGTTTTCTGAGGTTGCAGAATATGAGCGATATTTAATTCGAGGAA
TGAACATTTGAGGCATAATACGTCATAAATTTCCTGGCAGTACAAAAGGTCTAAAGCATT
AAAAAAATTGGTATAAGGCAGTACGTATGAACACAGTAGCTAGTGCGTAGTTGGGCCAAC
TCATCTGTTCTCTTGTAGAGCATAAACATAGTTTTGCTGGTGTCGTTGAACAATGGCAGC
AGTGCCTGATCGGTGTAGCCGTGTAGGATGCAGTTGTAGAGCATAGGACAGTGTAGTGAA
GCACGTCACTATTCTTGAGGATCCAGCCACCACCGCATAATTCGAGACAAGCGGGCCGAC
TCAAACTTGGTTGCCCAAGGTTGTATTATGACTTTGCACAAGCATATGCCTTTGCAAAGC
TTGTTAGCCTTCAATATACCAGGGAAAAAAATCCAGTATTCACCAAAATCTCTTTTGTTC
TAGAGTTACAAATATGCTAACTTATGATGCTAATGTGTTCATGGTAGAAATAGAAATGAA
GTTGCATATATGGCTTGTTTCAATTTCAAATAGAATTCTAAACATCCAAATGTGA

Homology of Contig U35_19294 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g23420.1	445	1e-102	protein\|sugar porter, putative, expressed
Brachypodium v1_2	Bradi2g30480.1	435	9e-109
Arabidopsis v10	AT2G43235.1	437	7e-55	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 41 Blast hits to 41 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). \| chr2:17968910-17970822 REVERSE LENGTH=437