barSeed - Barley Seed Development Database

Probe CUST_17930_PI390587928

Source Contig U35_45566

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17930_PI390587928	Hv_44K_v2	AGAGATTGGAGTTGAAGCTGAAGCAATTCGCAGAGGTGGAGACCTTGCTTTTGAAGGAAA	137	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362277	2606	2e-24	1938 - 1997	100	60 / 60	plus	ABC21653
MLOC	MLOC_38760.1	1033	2e-24	162 - 221	100	60 / 60	plus	ABC21653
MLOC	MLOC_38760.2	477	2e-24	7 - 66	100	60 / 60	plus	ABC21653
JLOC1	JLOC1_25230.1	917	8e-25	11 - 70	100	60 / 60	plus
Harvest21	ABC44605	215	3e-25	138 - 197	100	60 / 60	plus
Harvest35	U35_45566	215	3e-25	138 - 197	100	60 / 60	plus

Contig Sequence (215 bp)

>U35_45566 215 Hv_44K_v2
TCACCTGTCTCTCCCGAAACGTCAATACGCTGCAATGTGTGGCTTGTCAGCAGCGGCAAC
AAAGTGCAAACTTTNTGCAGATCAGGAGGAGCGTGAAATTCAGAGATTAGCGGCCACCAT
CATAAATCACCAGTTAAAGAGATTGGAGTTGAAGCTGAAGCAATTCGCAGAGGTGGAGAC
CTTGCTTTTGAAGGAAAGCGAGCAGGTTGAGAGGG

Homology of Contig U35_45566 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None