barSeed - Barley Seed Development Database

Probe CUST_1792_PI390587928

Source Contig U35_47299

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1792_PI390587928	Hv_44K_v2	TTGTTCTCTTGTTTGAGCGTCTTGCGATTATGTCTTCAGATGTGGGGATCAGACTGTCCA	600	GeneList: orange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.750	0.929	1.825	2.069	0.913	0.709
Raw	27.803	55.273	93.062	171.489	25.495	22.572

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC48203	666	3e-25	601 - 660	100	60 / 60	plus
Harvest35	U35_47299	666	3e-25	601 - 660	100	60 / 60	plus

Contig Sequence (666 bp)

>U35_47299 666 Hv_44K_v2
CGACGGCGATGGCATCGGCGTCGACGGCGGCGTCGCTCCGCCTCCTCCGCCGCCCCCTCG
GCCTCGCCCCCCTTCGCCCCGGCCGCCGCCTCCTCTGCGTCGCCTCCCCCACGGCGCTGG
CCAGCAACGGTGACTCCTCCTCCTCCCCTGCTCCCATGGCGCAGTCGGCGGTGGTGGACG
TGAACCCGCCGCGCGGCACCAGGGACTTCCCGCCGGAGGAGATGCGGCTGCGCTCCTGGC
TCTTCGACAACTTCCGGGAGGTGTCCCGCTCCATGGCCTTCGAGGAGGTGGACTTCCCCG
TGCTCGAGTCCGAGGCGCTCTTCATCCGCAAGGCCGGGGAGGAGATCACGCAGCAGCTCT
ACAACTTCGAGGACAAGGGCGGCCGCCGCGTCGTGCTCCGGCCGGAGATCACGCCTTCCC
TCGCGCGCCTCGTCATCAAGCAAGGAAAGTCAGTCTCCCTCCCACTCAAGTGGTTCACCA
TAGGACAATGCTGGCGATACGAGCGTATGACAAGAGGAAGGCGCCGCGAGCATTATCAGT
GGAACATGGACATTTTCGGTATGCCTAAAGTCCGGGCCGAGGCTGAGCTCATTCAAGCTA
TTGTTCTCTTGTTTGAGCGTCTTGCGATTATGTCTTCAGATGTGGGGATCAGACTGTCCA
GCCGAA

Homology of Contig U35_47299 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g51830.1	488	2e-96	protein\|tRNA synthetase class II core domain containing protein, expressed
Brachypodium v1_2	Bradi4g38980.1	473	2e-96
Arabidopsis v10	AT5G03406.1	263	2e-79	Class II aaRS and biotin synthetases superfamily protein \| chr5:839966-841444 FORWARD LENGTH=263