- Probe CUST_17916_PI390587928
- Source Contig U35_45594
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_17916_PI390587928 | Hv_44K_v2 | TCCACTTTCCTTAAAAGGGCTTATGTACGGCTGAACTCTTGGTTCCAGTGGTTCAACAGT | 302 | GeneList: darkorange MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.912 | 1.026 | 1.559 | 1.609 | 0.679 | 0.697 |
| Raw | 109.870 | 175.883 | 254.999 | 411.747 | 63.165 | 69.336 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_61073.2 | 2907 | 2e-24 | 1098 - 1157 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_61073.3 | 1382 | 2e-24 | 10 - 69 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_61073.1 | 2970 | 2e-24 | 1157 - 1216 | 100 | 60 / 60 | minus | None |
| JLOC1 | JLOC1_39878.4 | 3194 | 8e-25 | 1740 - 1799 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_39878.3 | 3205 | 8e-25 | 1751 - 1810 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_39878.2 | 2955 | 8e-25 | 1501 - 1560 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_39878.1 | 2850 | 8e-25 | 1396 - 1455 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC44666 | 500 | 3e-25 | 303 - 362 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_45594 | 500 | 3e-25 | 303 - 362 | 100 | 60 / 60 | plus |
Contig Sequence (500 bp)
>U35_45594 500 Hv_44K_v2 CTAGTCGCTCATTTTTCCCTAGGGGATTCCTGTGGGACGAGGGCTTCCATCAGTTAGTCA TTTGTCGCTGGGATGCCCATATATCCATGGACATAATTGGCCATTGGTTGGATCTAATTA ATGCAGATGGATGGATTCCTCGAGAGCAAATATTAGGGGCTGAAGCTTTAAGTAAAGTTC CTGAGGAATTTGTTCTGCAGTATCCTTCCAATGGAAACCCTCCGACATTATTTCTTGCGC TGCGTGACTTGGCAAGTGGCATACATGCACACCAGTTTTCGGATGAGGAAGCTCAAAAGA TATCCACTTTCCTTAAAAGGGCTTATGTACGGCTGAACTCTTGGTTCCAGTGGTTCAACA GTACGCAATCAGGCAAATATGAAGGGACGTTTTTTTGGCATGGAAGAGACAATGTGACAA CAAGGGAGTTAAACCCAAAGACTTTGACATCTGGGTTGGATGACTATCCTCGTGCATCTC ACCCTAATGACGAGGAGCGC
Homology of Contig U35_45594 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os01g69210.1 | 873 | 4e-110 | protein|mannosyl-oligosaccharide glucosidase, putative, expressed |
| Brachypodium v1_2 | Bradi2g59037.1 | 868 | 7e-113 | |
| Arabidopsis v10 | AT1G67490.1 | 852 | 1e-85 | | Symbols: GCS1, KNF | glucosidase 1 | chr1:25280633-25286581 REVERSE LENGTH=852 |