- Probe CUST_17914_PI390587928
- Source Contig U35_45596
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_17914_PI390587928 | Hv_44K_v2 | AACAACATACAATGAGGTTGCGGATGAAATTTATTCAGAGCTGAAATCCATGGCACATAT | 518 | GeneList: orangered4 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.620 | 1.990 | 1.093 | 0.819 | 0.495 | 0.586 |
| Raw | 55.708 | 106.511 | 51.347 | 60.804 | 12.667 | 16.874 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_30510.1 | 738 | 3e-22 | 64 - 122 | 98 | 58 / 59 | plus | None |
| MLOC | MLOC_49149.1 | 183 | 3e-21 | 111 - 170 | 97 | 58 / 60 | plus | None |
| Harvest21 | ABC44670 | 578 | 3e-25 | 519 - 578 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_45596 | 578 | 3e-25 | 519 - 578 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_17342 | 585 | 3e-25 | 115 - 174 | 100 | 60 / 60 | plus |
Contig Sequence (578 bp)
>U35_45596 578 Hv_44K_v2 GTTTCGGGCGGAGCCCCCCCCCCCCCGCCTTAGAACCGTCGCCTCGTGCCCCGATCTGAT CTGTTCCGAACCGTCATGGCGGACGGCGGGGCGTCGGCGCAGCTGTCCACGGGGTTCTAC TTGAGCTCGTCCCGGGCGCGCTGGGCGCAGTCGCGTCGGTGGTGCAGTCGGTCGTGGCGA ACGAGTCGTGCATGGGCGCATCCATCCTCCGCCTCTTCTTCCACGACTGCTTCGTCCAGG GCTGCGACGGGTCGCTGCTCCTGGACGACACTGCGAGCTTCCAGGGGGAGAAGATGGCGA CGTCCAACAACGGGTCGGTACGTGGGTTCGAGGTCATCGACGTCATATTTGTGCAATAGA GGGTTATACCTTGTACTAGATGTTTCGCTATAACCTTTTTCATGTGAGTTTTTTTTTCTG CGAGAATGTAAAGTTAAATTACTAACACACTTGTACTTTTATCTGATGTGCATTTGACAT GATTTTGTAGTTTGTGAGAAAGTTGAAGCCAAAGGAAGAACAACATACAATGAGGTTGCG GATGAAATTTATTCAGAGCTGAAATCCATGGCACATAT
Homology of Contig U35_45596 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |