barSeed - Barley Seed Development Database

Probe CUST_17911_PI390587928

Source Contig U35_4500

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17911_PI390587928	Hv_44K_v2	TCTGGTGTTATGTTGCATGCTGCTTGGTTCAATTTTTTGGGTCCAGTTTGGAGAAAAGTT	1082	GeneList: green MasterList: Arginine_synthesis_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.212	1.343	1.086	0.806	0.198	0.180
Raw	245.563	412.264	299.753	347.298	30.523	30.314

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54704.1	2043	3e-21	1948 - 2007	97	58 / 60	plus	ABC10620
Harvest35	U35_4500	1142	3e-25	1083 - 1142	100	60 / 60	plus

Contig Sequence (1142 bp)

>U35_4500 1142 Hv_44K_v2
CTTCTTTGGTGTTGATCTTACACCCTTGCATGGCTCAGCGTTTGACGGATACTTTTCACA
GCCCGTTGTGGACGCATTTGATCCAAGATTGTTGATTTCTCCATCTACGCATCATACACT
TGATTTCACTAGCATGAAGGAAGAGGACCTTTACGAGATTGATATTCCCCTGAGTTTTGT
ATCCTCTGTTGGGACTAGGGTGCATGGGCTAGCCTGTTGGTTTGATGTGCTGTTCAACGG
GAGCACTGTGCAAAGATGGCTTACCACTGCCCCCGGCTCCCCTACGACTCACTGGTACCA
GTTGCGATGTGTACTTGCACAGCCATTATATGTCATGGCTGGCCAAGAAATAACCGGCCG
CCTGCATTTGGTGGCCCACAGTGCGCAAAGCTACACAATATACTTAACAATGTCAGCCAA
AATGTGGGGTGTGGGTGCGGAGCCAGGCGGCATTCTGCAGACATCCACTGCCAAGCTTGA
ACTGAAGGAGCCTTACTACAGATTGTCTCAACCACAAGCTTATATGCCACAAGACCAACA
GCAGCTACCGTTGTCATCTTTGCAGGCGCAAGGATCTGGGCAGCAGATGCAAGATGGGCT
CAGCCCGGGCATCACTGTAGAACAGGAGAGGGACTCTGCAGCCTTCACTCGATAGGTCTG
GAACCTGCATGCTTTGCTTCGTGCAAGGAGCTCAGGTCTGTACAACAATATGCTTCTGCT
GGATGCAGCCACGCGTAGCTGCCAATTGGCTAACATCGCGTCTAGTTGCGGTCAGAGATC
ATCATGTCCGAATTGTGCAGCGCTGCAGCTAAACGTGCTCGCCCCTACCCCGCTATTTGA
TGTCATACAACAATAATAGTGCATCTGGTCGGACTACAAAGTCGAAATTAGAAGGCATCT
AACAGGGAAGAAGGTTGTATGTTCTTATGTATAATTCAGATCGATTGTTGCGCCCTGGAG
TTCTATTCTACAAATTGATTGTTGTGTGTGGGAGTTGAATATTGATAGAATGATAGTCAT
CATTGTCACCCGCTCTTTCTAGTTTTCTCCGTTAATAACTGTGAACTGGTTTGGGTTCAT
TTTCTGGTGTTATGTTGCATGCTGCTTGGTTCAATTTTTTGGGTCCAGTTTGGAGAAAAG
TT

Homology of Contig U35_4500 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g47500.4	391	1e-113	protein\|histone-arginine methyltransferase CARM1, putative, expressed
Brachypodium v1_2	Bradi1g18180.1	537	4e-119
Arabidopsis v10	AT3G06930.2	535	1e-91	\| Symbols: ATPRMT4B, PRMT4B \| protein arginine methyltransferase 4B \| chr3:2185469-2189296 REVERSE LENGTH=535