barSeed - Barley Seed Development Database

Probe CUST_17898_PI390587928

Source Contig U35_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17898_PI390587928	Hv_44K_v2	AACATTTTTACTTGTATCTGCTCCAAGGAATTAGTCCCTTAGAAGTGGGACATTTATCGC	569	GeneList: salmon MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	12.659	9.234	1.627	0.570	0.159	0.279
Raw	549.885	659.779	97.193	58.337	3.298	9.716

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251627.1	706	2e-24	595 - 654	100	60 / 60	plus	ABC09809
MLOC	MLOC_58855.1	723	2e-24	594 - 653	100	60 / 60	plus	ABC09809
JLOC1	JLOC1_38259.1	848	8e-25	607 - 666	100	60 / 60	plus
Harvest21	ABC09809	707	3e-25	570 - 629	100	60 / 60	plus	ABC09809
Harvest35	U35_4513	707	3e-25	570 - 629	100	60 / 60	plus

Contig Sequence (707 bp)

>U35_4513 707 Hv_44K_v2
CTCCCTTATCGCGGTGGATTGGCCTCCTCTATCTCTAACCTGTTGGCCGCCCATCTGCAC
TCTCTCCTCCAAACTCTCAGCTCCCTCCCTCGCACACGCCGTTCTCGAATGGCGGCCACC
TCCGGCCTCACGGCCACCGTCACCTCCCCTCCGGCCGCCCTTAGAACCTCGCCTCCTCCC
GTGCTCTTCCTCCGCCCCATCTCTCGCTGCTCCAGGCTCCATTCCCTCAAGGCCAAGGCA
GCAGCAAAGGACCAGGGCGAAAAGAAGCCCGAAGCTACCAAAAAGAAGGCATACAGTCTT
GTTTGCACTGCCTGTGAAGGGAATGGCGCAATCGCATGCACCCAATGCAAGGGAGGTGGG
GAGAATTTGGAAGACCATTTCGGTGGCCGATTCAAAGCTGGAGGCTTATGCTGGCTTTGC
AGAGGAAAGCGTGAAATTCTATGTGGGAGCTGCAATGGCGCTGGCTTCTTGGGTGGATTT
ATGAGCACTGCCGACGACACTTCCGAATGAAATGCTTATGTTGTTATTTTTTTGCTTATG
TTGTATTTGACAAATTTTGAGAGATCTGTAACATTTTTACTTGTATCTGCTCCAAGGAAT
TAGTCCCTTAGAAGTGGGACATTTATCGCATTTAATAAATGTATAATTATTTTATTTGTG
ACAAAAATATGTCACTAAAAAAAAAAAAACAAAAAAAAAAAAAAAAA

Homology of Contig U35_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g22690.1	132	1e-57	protein\|bundle sheath defective protein 2, putative, expressed
Brachypodium v1_2	Bradi1g58600.1	134	1e-64
Arabidopsis v10	None