barSeed - Barley Seed Development Database

Probe CUST_17897_PI390587928

Source Contig U35_4514

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17897_PI390587928	Hv_44K_v2	CACATAAGGGTAATCTTGCTCTGTTCCATCTGTTTGATCTGCAAATTCCTTCTCCATAAA	1439	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.483	1.539	1.278	0.856	0.297	0.269
Raw	4413.190	7373.063	5250.783	5559.607	657.217	655.770

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_33876.2	1979	2e-23	1883 - 1940	100	58 / 58	plus	ABC10202 ABC39374
MLOC	MLOC_33876.1	985	2e-23	156 - 213	100	58 / 58	minus	ABC10202 ABC39374
JLOC1	JLOC1_21888.1	2779	1e-23	2515 - 2572	100	58 / 58	plus
Harvest35	U35_4514	1513	3e-25	1440 - 1499	100	60 / 60	plus

Contig Sequence (1513 bp)

>U35_4514 1513 Hv_44K_v2
GGTTCAACGAGCCTGCAAAGAAGTTCTATCCCGTGTTTGAGCTTGGGAAGGTCTACTACA
TCTCCAAGGGGTCGCTGAGAATTGCAAACAAGCAGTTCAAGACGGTCCAGAATGACTATG
AGATGACCCTGAATGAGAATGCTGTTGTTGAAGAAGCTGAGGGGGAATCTTTCATTCCAC
CAGTGCAATACAACTTTGTTAAGATTGATATGCTGGGGCCATATGTTGGTGGCAGGGAGT
TAGTAGATATCATTGGTGTTGTTCAGAGTGTATCACCTACTCTGAGTATCAGAAGGAAGA
TCGACAATGAGTCAATTCCAAAGCGTGACATTGTTGTTGCAGATGACTCAAACAAGACCG
TCACAGTTTCTCTTTGGAATGATCTTGCCACCACTCTTGGTGAAGAGCTGTTGGACATGG
TTGACTCTGCACCTATCGTTGCAATCAAGAGCCTGAAAGTATCTGACTTTCAAGGCGTGT
CTGTCTCTACAGTAGGCAAGAGTACACTTGTTATTAACCCAGAGTTGCCTGAGACTGAGA
AGCTTAGAGCCTGGTATGAATCTGAAGGCAAGGGTACTTCCTTGGCATCAGTTGGTGCTG
GAATGGGTGCATCCAGCGCTGGTGGTTTGAGATCAATGTACTCTGACAGAGTTTTTCTGT
CTCACATCACAAGTGACCCTAACTTGGGCCAGGATAAGCCTGTTTTCTTCAGCCTGTGTG
CCAACATAAGCCACATCAAGCCTGACCAGACCATGTGGTACCGCGCTTGCACCACCTGCA
ACAAGAAGGTGACCGAGGCACTCGGATCAGGATACTGGTGTGAAGGGTGCCAGAAGAACT
ATGAGGAGTGCTCGTTGAGGTACATCATGGTGATCAAGGTCTCTGATCCAACAGGTGAGG
CCTGGCTGTCCCTTTTCAATGACCAAGCAGAGAGGATTGTCGGCTGCAGTGCAGATAATC
TTGATCGGATCAGAAAAGAGGAGGGCGATGACATGTTCCAGCTCAAGCTGAAGGAAGCCA
CCTGGGTTCCCCACCTGTTCCGTGTCAGCGTTGCGCAGAACGAGTACATGGGCGAGAAGA
GGCAGAGGATCACCGTGAGGAGCGAGTCGCCGGTTGACTTTGCTGCTGAAGCGAGGTACC
AGCTTGAGGAGATCGCCAGGCTCACCTCCAGCTAGAAGATGCAAGAGGAGAATGCCTGCT
CCACTGAAGGAGATTTCCAAGTTCACCGCCCCCTGCTGGGAGAAGAGAAGATGCAAGATA
ATGCCTGCTCCCCTTGAGGAGATAGATATCCAAGCTCTCATAGCTTTGCTAGATGAAGCC
ATGTTTTGGCCCAAGTTTGCTGCTTCAGCCGTGTCTTTCTGCCATGTCGCTCCTCAAATG
TAGTGTTAACTTAACGCTTTTGCTGTCCTGTGTTATATACGTAGACGTTCGATTCGGAGC
ACATAAGGGTAATCTTGCTCTGTTCCATCTGTTTGATCTGCAAATTCCTTCTCCATAAAA
AAAAAAAAAAAAA

Homology of Contig U35_4514 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g11540.1	631	0.0	protein\|RPA1B - Putative single-stranded DNA binding complex subunit 1, expressed
Brachypodium v1_2	Bradi1g69980.1	636	0.0
Arabidopsis v10	AT5G08020.1	604	1e-171	\| Symbols: ATRPA70B, RPA70B \| RPA70-kDa subunit B \| chr5:2572107-2574879 FORWARD LENGTH=604