barSeed - Barley Seed Development Database

Probe CUST_17893_PI390587928

Source Contig U35_4518

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17893_PI390587928	Hv_44K_v2	CCGTTGCTAGGAACCATTAAAGAAAGTATTTAAGGATGTTGGACCAACTTTTGTTTTTTC	1993	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.407	1.840	1.190	0.759	0.299	0.220
Raw	261.579	509.661	298.086	294.396	40.868	33.023

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_36571.1	2461	4e-23	2325 - 2384	98	59 / 60	plus
Harvest21	ABC09675	2070	1e-23	1994 - 2053	98	59 / 60	plus	ABC09675
Harvest35	U35_4518	2070	3e-25	1994 - 2053	100	60 / 60	plus

Contig Sequence (2070 bp)

>U35_4518 2070 Hv_44K_v2
GTTGATTTTGTCCACAAACACCGGAAGGCTCTTGAGAGTGAGCATGTCTCGACTCATTTG
CATCACTGGATTGATCTAATATTCGGATATAAACAGAGGGGTAAAGATGCAGTAATGGCC
AACAATGTGTTCTTCTACATCACATATGAGGGAACTGTTGATATCGACAAAATTGCAGAT
CCGGTGCAACGGCGAGCCATGCAAGATCAAATAGCCTATTTTGGACAAACACCATCTCAA
TTGCTGACTGTCCCTCACATGAAGAGAAAGTCATTGACAGATGTCTTACAACTACAGACC
ATATTCCGGAATCCAAGTGAACTTAAATCTTATGTACTGCCTAATCCAGAACGCTGCAAT
GTCCCAGCAAGTACCATGCTTGTATCAAATGATTCTATTGTAGTTGTAGATATGAATGTG
CCCGCGGCGCATATTGCACTTCACCAGTGGCAACCAAATACTCCAGACGGCCAAGGGGCA
CCTTTCCTTTTTCATCATGGTAGAAATGCTGCAAGTTCAACAAGTGGTGCATTCATGCGT
ATGTTCAAAGGATCCACTAGTTCTGGAGAAGATTATGAGTTCCCAAGAGCTATAGCATTT
GCTGCTTCTGCAATCCGTAGTTCAGCTATAGTTGCTGTCACCTTTGACAAAGACATCATC
ACTGGTGGGCATGCAGACTGTTCGGTGAAGTTGATCTCCCCAGATGGAGCAAAGACAATT
GAAAGTGCTTCTGGGCATCTTGCTCCAGTGACCTGCCTTGCACTTTCCCCTGATAGCAAC
TACCTTGTGACGGGGTCTCGAGATACTACAGTTATACTCTGGAGGATTCATCAGGCAGGC
TTTATACATAAGAAAAATCCTCCTGAACCTCCACCTGCAACACCAAGGACACCACGCAGC
CCTCTTCCTACTAGCCCTAGTAGCATGAGCAACCTTTTAGAAACCAGGAAATGTCGAATC
GAAGGTCCTATGCATGTGTTAAGAGGACACCTTGGAGAAGTAATTAGCTGTGCAGTTAGT
CCAGACTTGGGACTTGTTGTATCCTCGTCAAACATGTCTGGTGTGGTGCTACATTCTTTG
CGGACTGGTCGGCTGATAAGGAAGATTCATGTAGCGGAGGCGCATTTTGTATCCTTGTCT
TCCCAGGGTATCATTTTGGTTTGGAGTGAATCGAAGAAAAGATTATCTAGCTTCACAGTC
AATGGAGTCCCTATTGCCACCTCAGTTCTATCACCCTTTTCTGGGGGAGTTAGTTGCATT
GAGATTTCTATGGATGGCCATTTTGCCCTCATCGGAACTTGTTCATCCAGCCATTACAAG
TGCGAGGACAATACTGAGCCTGGGAAACAAAGTCGCAAGGCTGATATATCTGAGCAAACT
GAAATCGGGCAATCTGTTCATGTGCCTTCGATCTGCTTCGTTGATCTGCATAAACTTAAG
GTATTTCATACACTGGAGCTGGGAAAGGGCCAGGACATCACAGCAATTGCATTAAACAAA
GAGAACACTAATCTTCTAGTTTCTACTGCTGATAAGGGTCTAATGGTGTTCACTGATCCT
GCTTTGAGCTTGAAGGTAGTGGATCAGATGCTACGCCTTGGCTGGGAAGGGGACGGACTT
CTTCAGTCATGAGAAAGCCATCGATGTTAAGTCATTACTTGCTTATAGATTGGTGGCGCC
CATTCGATAGCATAGGTAGGAGCAGGGTACTGAAGCAAAGGCGTGGAATATGCCATCTGT
ACAAAACGAAAAAGCAATAGGCATTGTGAGTTAGGCTAGGTCGTATACTGTATCCAACAG
GTCGTATAGTCAGATAAAGAGGGAACGAGTAGACTTGCTGGGCAACAGCATGATCCTATT
GTTGCATCAGCGCTGCCTTGTAAATTCTGTCATTTTGTAGAGTGCATGAGTAGTTGTATA
CAATTCTGTCATTGCGAGTCTCTGCTTGTAGGGTGATCATCTTTTTGTTCATGATTTTGA
TTTCGAGTTTTGTCCGTTGCTAGGAACCATTAAAGAAAGTATTTAAGGATGTTGGACCAA
CTTTTGTTTTTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_4518 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os04g46892.1	418	protein\|WD domain, G-beta repeat domain containing protein, expressed
Brachypodium v1_2	Bradi5g17947.1	2909
Arabidopsis v10	AT2G45540.2	3001	WD-40 repeat family protein / beige-related \| chr2:18757881-18772229 REVERSE LENGTH=3001