barSeed - Barley Seed Development Database

Probe CUST_17882_PI390587928

Source Contig U35_4529

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17882_PI390587928	Hv_44K_v2	TGATACAACGTCCTGCGCCCTGCCATGGTCTATTTCAGTTTCTACTTGAAAATCTGTAGC	607	GeneList: lightyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.466	0.485	1.138	1.863	1.369	1.002
Raw	221.157	349.205	753.339	1913.767	497.642	394.960

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375663	757	2e-24	698 - 757	100	60 / 60	plus	ABC11524 ABC11525
MLOC	MLOC_18869.1	992	2e-24	428 - 487	100	60 / 60	plus	ABC11524 ABC11525
JLOC1	JLOC1_13081.1	690	8e-25	427 - 486	100	60 / 60	plus
Harvest35	U35_4529	681	3e-25	608 - 667	100	60 / 60	plus

Contig Sequence (681 bp)

>U35_4529 681 Hv_44K_v2
GAAAGAGAAGCGAGCTAAGAACAGAGTAGTAGCCCTTTGGGAACGAACCGGTCGGGTAGA
ATTCTAAGATGAGCCGTGTGTGGATGGCAGCGACGGTGGCCGCCGTGCGGGCCCAGAGGG
AGAGGGCGGTGGTGGCGGGGTCGTGGGACCGGCTGGCCGGGCTCGCTCCCCAGGCCGCCG
CGCTCGGGGCGGCGCGGTCGGCCGCCGACGACGGCCGGAGGCAGGCCGCCGCCGACGAGT
CGCTCCGCAAGGCCATGTACCTCAGCTGCTGGGGCCCCAGCTGATCACGGCGCCACACCG
GCCCTCGCGGGGACGGATGGAGCGCTGTGGGTTAGTGGGGCCTCGATGGGCTTGAGCTTG
GGCCGGGCGCACTTGGGTAGCAGCAATCATGTTGGTTGGAGAGGGTGAACAAACATGTGC
AAACCTTTGGAAATAGAGGATGGTGGATGTACTCCTGTACATACAGATGCTAGTGTTTCA
TGTACATATTTCATGCAATTAATTTGAAGAAGGGAATATTTCAGCTAGAAAAAAAAAAAA
AAAGCAAGCAGACTTAACCATGCCAGGTGTTCCTTAGCATTGGGATCGTAGCATATTTGG
ATAAACTTGATACAACGTCCTGCGCCCTGCCATGGTCTATTTCAGTTTCTACTTGAAAAT
CTGTAGCGCGACTGCTACCGC

Homology of Contig U35_4529 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None