- Probe CUST_17881_PI390587928
- Source Contig U35_4530
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_17881_PI390587928 | Hv_44K_v2 | GTGGATGTACTCCTGTACATACAGATGCTAGTGTTTCATGTACATATTTCATGCAATTAA | 238 | GeneList: lightyellow MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.428 | 0.459 | 1.222 | 1.846 | 1.340 | 1.019 |
| Raw | 1993.527 | 3347.730 | 8012.637 | 18088.590 | 4778.703 | 3969.373 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK375663 | 757 | 2e-24 | 533 - 592 | 100 | 60 / 60 | plus | ABC11524 ABC11525 |
| MLOC | MLOC_18869.1 | 992 | 2e-24 | 263 - 322 | 100 | 60 / 60 | plus | ABC11524 ABC11525 |
| JLOC1 | JLOC1_13081.1 | 690 | 8e-25 | 262 - 321 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC11525 | 628 | 3e-25 | 127 - 186 | 100 | 60 / 60 | minus | ABC11525 |
| Harvest21 | ABC11524 | 339 | 3e-25 | 42 - 101 | 100 | 60 / 60 | minus | ABC11524 |
| Harvest35 | U35_4530 | 339 | 3e-25 | 239 - 298 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_4529 | 681 | 3e-25 | 443 - 502 | 100 | 60 / 60 | plus |
Contig Sequence (339 bp)
>U35_4530 339 Hv_44K_v2 CGCCGCCGACGAGTCGCTCCGCAAGGCCATGTACCTCAGCTGCTGGGGCCCCAGCTGATC ACGGCGCCACACCGGCCCTCGCGGGGACGGATGGAGCGCTGTGGGTTAGTGGGGCCTCGA TGGGCTTGAGCTTGGGCCGGGCGCACTTGGGTAGCAGCAATCATACAGTCTCGTCACAAG AAGATGGTTGGTTGGAGAGGGTGAACAAACATGTGCAAACCTTTGGAAATAGAGGATGGT GGATGTACTCCTGTACATACAGATGCTAGTGTTTCATGTACATATTTCATGCAATTAATT TGAAGAAGGGAATATTTCAGCTAAAAAAAAAAAAAAAAA
Homology of Contig U35_4530 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |