- Probe CUST_17879_PI390587928
- Source Contig U35_4532
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_17879_PI390587928 | Hv_44K_v2 | GCTTCCTGATTCATGTTCTTCTTGGTTTTTCTCTGTTCTTCATAAGGAAATACACAGTTC | 530 | GeneList: darkolivegreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.373 | 0.506 | 1.046 | 1.270 | 1.058 | 2.100 |
| Raw | 112.721 | 241.651 | 433.332 | 795.387 | 237.540 | 529.018 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_49918.1 | 400 | 2e-24 | 115 - 174 | 100 | 60 / 60 | minus | ABC11287 ABC11288 ABC18705 |
| JLOC1 | JLOC1_31911.1 | 425 | 8e-25 | 139 - 198 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC11287 | 628 | 3e-25 | 544 - 603 | 100 | 60 / 60 | plus | ABC11287 |
| Harvest35 | U35_4532 | 608 | 3e-25 | 531 - 590 | 100 | 60 / 60 | plus |
Contig Sequence (608 bp)
>U35_4532 608 Hv_44K_v2 GGAGTACGCCCCTACACATAGCACGCTTGAAGATGACGGCACGCCGGACGTCGATGGCCT CCGTGGCTGCGCCTGGGAGCGTCGCCACCGGGAAGCCGCCGCTTGGCTGGGAGGGGCTCG TTGCGCCGCGCGCTGTCGGAGGGCGTCGTGTCGCCCGCGTGCTGGAAGAGCCGTGCCAGG GGGCGCGGGCACTCGTGCCGCGCTAGCCGTCCGCATAGCCTCTTCGGAGGCAAGGCTAGA ATCGCCGGGCGCCATATTGTGCTGCAGTGTCTGGAGGTTTCTATGGCCGCCGGCCGCCTC CGCGAAGGCCGATGGCCATGGTTGCGCTGGACAGCGTTACGTCGCCGTTGGCCTTGTCCA GCAGGTTAGTATTCGTGTGTGAGAACAAGAAAAATTGGATTAGGATCAACTCATGATGTA GCAATTAAGGTTCAAGAGTTTTGATCTGTGTACTTCGTGTGTGAAGTACGGAATCTGATT TGATGCTACTAGTTCGTGACTTGACTCCCCTTTTTTCTTATTCGATTTATGCTTCCTGAT TCATGTTCTTCTTGGTTTTTCTCTGTTCTTCATAAGGAAATACACAGTTCTTCCTCCTAA AAAAAAAA
Homology of Contig U35_4532 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |