barSeed - Barley Seed Development Database

Probe CUST_17877_PI390587928

Source Contig U35_4534

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17877_PI390587928	Hv_44K_v2	TCTTGCCGGTGTTGCAGTTGTACATGCTTCTGTTTAATCGATTATTGCAAAATCAAAAAA	1094	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.321	1.616	1.295	0.944	0.299	0.349
Raw	469.296	905.645	621.696	724.436	78.603	101.282

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51815.1	1797	9e-22	1739 - 1793	100	55 / 55	plus	ABC11120
JLOC1	JLOC1_33128.1	2357	5e-22	2038 - 2092	100	55 / 55	plus
Harvest21	ABC11120	1165	3e-25	12 - 71	100	60 / 60	minus	ABC11120
Harvest35	U35_4534	1165	3e-25	1095 - 1154	100	60 / 60	plus

Contig Sequence (1165 bp)

>U35_4534 1165 Hv_44K_v2
GAGCTAGTCGGCAACTATTGCTGTTTTCTGCAACCTTTCCTGTAACTGTCAAGGATTTTA
AGCAGAAATACCTACCAAGACCTTATGTTATTAATCTGATGGATGAACTAACGCTGAAAG
GAATTACACAATACTATGCCTTCGTAGAAGAAAGGCAAAAGGTTCATTGTCTGAACACGC
TTTTTTCAAAGCTTCAAATAAACCAGTCTATTATATTCTGCAACTCTGTTAATAGAGTTG
AGCTACTGGCAAAGAAAATCACTGAGCTCGGCTATTCGTGCTTCTACATTCACGCTAAAA
TGTTGCAAGACCACCGAAACCGGGTTTTTCATGATTTCCGCAATGGCGCTTGCAGAAACC
TTGTTTGCACAGATCTTTTTACCAGAGGAATTGACATTCAAGCTGTTAATGTTGTCATTA
ATTTTGACTTCCCCAAGACTGCTGAAACATATTTGCATAGGGTTGGGCGTTCTGGAAGAT
TTGGACACCTTGGTTTGGCTGTGAACTTAATCACTTATGAGGACCGTTTCAACATGTATA
GGATTGAGCAAGAACTCGGGACAGAAATAAAAACAATACCTCCACAGATTGACCTGGCGG
AGTATTGCCAATGATCAGTTAACAGTTTTAGAAGCATATCTTTTATGAAAACATCACTAG
GCAAATATACCAGATGTACATAGCACCTCATCAAGGTTTTATTTGGTGCCTTGGTGATGC
ATCCAAGCTTCTATTTCCATCAGTGGAGCGTGCCTTCTCTGCTGGTACCGGTGCTAATCA
TTTGACTGTGGAGATGCACCTGCTTTGAGATTCAGAACTGTTGTCAACCCAAACATTATT
TCTTGCTGTATGCATCTGCCCAGGATTGCCTTACATTTGTTTTCTCGTTTCTTTTCTGGT
TGTGTCATGTTGGGATTCTGTTGCTTGAGATTGTATCATCATATTGCGGCATTTTTATCA
TTTTACTTTGCTTTATTCTGTTCGCACAAATAGCTATATTTCCTGTACTTGATTCCTTGT
TAATTTCGGTGGTTCTTTGTGTAGACCATTAACCTCAAGTATTTCCCTTGTATTCTCAAT
AGCCTTGTTATTTGTCTTGCCGGTGTTGCAGTTGTACATGCTTCTGTTTAATCGATTATT
GCAAAATCAAAAAAAAAAAAAAAAA

Homology of Contig U35_4534 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g42860.1	509	4e-134	protein\|DEAD-box ATP-dependent RNA helicase, putative, expressed
Brachypodium v1_2	Bradi3g30250.2	524	1e-140
Arabidopsis v10	AT4G00660.2	505	3e-130	\| Symbols: RH8, ATRH8 \| RNAhelicase-like 8 \| chr4:274638-277438 FORWARD LENGTH=505