barSeed - Barley Seed Development Database

Probe CUST_17876_PI390587928

Source Contig U35_4535

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17876_PI390587928	Hv_44K_v2	GTATGTACATGTACCGCCATTAATTGCTGTTGCTTGAGTTTGACATGTCACTATGTGAAA	817	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.908	2.263	1.328	0.879	0.360	0.495
Raw	189.637	366.582	176.971	185.864	27.151	40.901

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_42017.1	1765	3e-24	1697 - 1755	100	59 / 59	plus
Harvest35	U35_4535	891	3e-25	818 - 877	100	60 / 60	plus

Contig Sequence (891 bp)

>U35_4535 891 Hv_44K_v2
GGCGACGTCGACCAAGTCATCGATTTCAACTCCAACTCTGCCTACGCCACCGGTGGCCGT
TCCGGATCCGGACTCGAGGTTAAGATGGAACAGCACATGCCGCCGCACATGATGTACTCG
AGCCCGTACTTCTCCCTGCCGGCCGCTAATTCCGGCGACCTGTCGCCGGCGATCCGGAGG
TACTGCAAGGCGGAGCAGGTCTCGGGGCAGACGTCTGCGCTCAGCCCGTCCCGCGACACC
GGGCTCAGCACCGACCCCAACGCCGCCGGTTGCGCCGAGATCTCGTCGGCGCCCACACCG
TCGTCCCACAATCAAGACTTCCTTGACCACCTTGACGAGTACCCCGCCCTCAACCTCGCC
GACATTTGGAAGTACTGAGGACGCCCGGATCGATCGGAGCTGCGTGCCACACGATTGGCT
CTGGCTCTGGCTCTCCTTGATTAATTACTCGATTGGATTACTTGACTTGGTGTGTGATGC
TCGTGTTAGTGGTTTGCTGATGCATCATCTTCTTTCCGGAGGATTCTCAATCTCGGGTTG
GATCAGGTGATTATCCATCCAGACGGACCTCCAGGGATTAGCTAGGCCTCCTTAATTATG
TTGATTAATTAAATTAAATTAACTAGTCCTAGGTTCATATCTTGATCTGTGTGTACATAT
CACTACTACTCTGATTGTGATTATGGGGAGTAGCAGTAACAATCATGATGGTTATACAAT
TAATGGGTGTAGATTAGGGGGAGGACTTGAGATCCATTTATGAATTGATTAATTTGGGCG
CTGTGGATGAGCCGGCCAGACAGCTAGCGCTAGCTTTGTATGTACATGTACCGCCATTAA
TTGCTGTTGCTTGAGTTTGACATGTCACTATGTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_4535 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g63630.1	359	2e-53
Arabidopsis v10	None