barSeed - Barley Seed Development Database

Probe CUST_17874_PI390587928

Source Contig U35_4537

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17874_PI390587928	Hv_44K_v2	CTGCTTTGGACTCCTGACGTGTAATTAACCGAACACAATATTTCTCCCTCCCATGAATTC	1561	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360925	1933	2e-24	1858 - 1917	100	60 / 60	plus	ABC10427 ABC11582
MLOC	MLOC_16791.1	1076	2e-24	28 - 87	100	60 / 60	minus	ABC10427 ABC11582
JLOC1	JLOC1_11588.1	1149	8e-25	1046 - 1105	100	60 / 60	plus
Harvest21	ABC10427	1649	3e-25	1562 - 1621	100	60 / 60	plus	ABC10427
Harvest35	U35_4537	1649	3e-25	1562 - 1621	100	60 / 60	plus

Contig Sequence (1649 bp)

>U35_4537 1649 Hv_44K_v2
CGGCGGCGCCGCCGCAGAGGAAGGACCCGTACGAGGTGCTCGGGGTGGCCCGCACCGCCA
CCGACCAGGAGATCAAGAGCGCCTTCCGCCGCATGGCGCTCAAGTACCACCCGGATAAGA
ATGCCGATGACCCTGTCGCATCAGAAATGTTCCAGGAAGTCACGTTTTCTTACAGCATTC
TGTCGGATCCCCATAAGAGGCGGCAGTACGACACGTCAGGGTTCGAGGCCATCGAAACTG
ATAGCCAGGAATTAGAGCTGGACCTATCCAGTCTCAATACCGTAAACACCATGTTCGCAG
CTATTTTCAGCAAGCTTGGTGTACCAATTAAGACAACTGTTTCAGCAACCGTTTTGGAAG
AAGCATTAAATGGGTCTATTGTGGTTTCCCAGCTCCAGCTAGGAAACGCTGTGCGCAAGA
AGGTGGAAAAGCAAACAGCTCATTTTTACTCTGTAGACATCACAGAACAGGAAGCTAAGA
AGGGGCTAGTTTGTCGTGTGCATTCAACTGACAAAAGCAAATTTAAGCTGCTTTATTTTG
AGCTCGAAGAAAATGGTGGATTGAGCCTTGCACTGCAGGAAGATAGTGTAAAGGCCGGCA
AAGTTTCTTCCGCAGGAATGTACTTTCTTGGGTTTCCTGTGTATCGTTTTGAGCAAAATA
ACTCAGCACCAGCTGCGAAGGATCCTGATAGCGCATTCTTTAAAAGGCTGGATAGTTTCC
AACCATGTGATATTAATGAGCTGAAACCGGGAACCCACTTTTTTGCCGTCTATGGTGACA
ATTTCTTCAAAACTGCAAGCTATACTATAGAGGTTGTCTGTGCTGAATCTTTCCCTACTG
AAAAGGAGAAGCTACAACATGTGGAGGCAAAGATACTCACAAAAAGAGCTGAGCTGTCTA
AATTCGAGTCGGAGTACCGGGAAGTTTTGGCAAAGTTCACTGAAATGACTAGCAAATACA
CACAAGAAATGCAAACGATCGACGAGCTTCTGAATGAAAGGAATGTAATCCATGCATCCT
ATACCAACAATCCACCTCTAAAACGGACTCCGAGCAGGAATAAATCTAAATCGTCACCTT
CCTTCAAATTTGATGAAGAAAAAAACCAGAGGAAAGAAAAGAAAGCGAAGGATCAGCACA
TGGAAGGCTGCGGAAGTGAAGATGACGAGTCGAGTGAAAAGAAAACCAAAGAGCGGTTCC
CAAGGAAGAGATGGCTGAACATTCCTTTCAAAGTTGACAGGAGAAAGCCATGCTGAGCAT
AATGGTATGCGTACAAGTGAGATACAAACTACTTTCATTTTGACTGCCTCTGGAAGAACT
CCTTCGCCGTTGTTATCTCTTTCCTTGGTGCTGCCTACTTTATTTCCTGCAAAGGTTGGC
TGCAGCCCTGAGATCATGATATATGGTTAAGAGACGAGCACTTGTAGCTCAGGCCATCTA
CTGCCACCGTAGTCCAGTTCCATATATTCTTTCAAGTGTGATATGTCAATTTTGATTTCA
TTGGCTGTGTAATCAGTTGTAAATATTAGTTATCTTGTCTCGTTGCACATTACCTCTTTC
CCTGCTTTGGACTCCTGACGTGTAATTAACCGAACACAATATTTCTCCCTCCCATGAATT
CATTTTTACTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_4537 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g13060.1	436	0.0	protein\|heat shock protein DnaJ, putative, expressed
Brachypodium v1_2	Bradi1g44760.1	441	0.0
Arabidopsis v10	AT1G24120.1	436	2e-169	\| Symbols: ARL1 \| ARG1-like 1 \| chr1:8529283-8531946 REVERSE LENGTH=436