barSeed - Barley Seed Development Database

Probe CUST_17869_PI390587928

Source Contig U35_4542

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17869_PI390587928	Hv_44K_v2	GTATATACAGATTGTTGGCATGTGCTACGAATGCATCTATCCATCCTGATTCTGGTCAAA	1570	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.394	1.555	1.431	1.010	0.310	0.252
Raw	937.107	1616.290	1307.320	1431.175	157.550	139.643

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_6589.1	1305	2e-23	1246 - 1303	100	58 / 58	plus	ABC10397
MLOC	AK365693	1463	7e-23	1407 - 1463	100	57 / 57	plus	ABC10397
JLOC1	JLOC1_4306.1	1450	1e-23	1361 - 1418	100	58 / 58	plus
Harvest21	ABC10397	1644	3e-25	1571 - 1630	100	60 / 60	plus	ABC10397
Harvest35	U35_4542	1644	3e-25	1571 - 1630	100	60 / 60	plus

Contig Sequence (1644 bp)

>U35_4542 1644 Hv_44K_v2
CAGAGAAGGGCCGGGTTGGTTAGAGTCCAAAGAGGCGACGCGAGCCGACGGCGGACGTGC
TCTCCTCTCCTCTCCTCGCCTCCCCTCCGGCTCTCCCTCTCCCTCCCCGCATTCCCTTCC
ACCGCATTCCGGGGTATATTTAGCCTCCGGTCCCTAGAGGCAGGCAGGAGGGGGAGGCGC
GCGAGCACCCGGACGGCCGTCTCCACCGTCGGTCACGCGGCGCCCATCTCCGGCCGCCCT
CCGCCCAGATCCCTCTTCAGTCAGGTTTTCCCCCGCGGCCCTCGCCGTCTCCTTTCCGGC
GCCGGCGGCGTCCTCTGGCCCGTGCTCTGGATCTGGGTGTGGTGCGCAGACGGTCCGTCG
GAGAAGATGATGGGCGGCTTCGTCTCCAGGATCCTCCTGCTGGTTTTCGGCTATGCGTAT
CCTGCATACGAGTGCTACAAAACTGTTGAACTGAACAAACCTGAGATCGAGCAACTCATA
TTCTGGTGTCAGTACTGGATTTTAGTTGCCCTTATGACGGTCATGGAGAGGTTTGGAGAT
TTAACAATATCATGGCTACCATTTTACTCAGAAGCAAAGCTGCTGTTCTTTATATACTTG
TGGTACCCCAGGACAAAGGGGACTACCTACATTTATGGGACTTTCTTTAAGCCATACATT
TCACAGCATGAGAATGAAATTGACCGGAATTTGCTTGAGTTGAGAGCTCGTGCCAGCGAT
GTTGTTGTCGTTTATGTCCAGAAGGTTGCTGCTGTTGGACAGAATACCTTCTTTGATGTT
TTGAAGTATGTTGCGTCACAATCACCATCCCAGAAATCAAAGCAACAACGTTCTCAGGAA
CCACAGCAGCCTCAGCAGCAGCAATCACAACCACAACCACAACCGCAGGTACAGCAGCAG
CAACCACAAAAACAAGCGCAGCCCGTTATGCGCAGAGCAGCATCTATTGCTGCTCGGCAA
GCAGCAATGGCACAGCAAGCTCAGGAGACCAAGCCCGTTTCCCCCAAGATCAAGCGTCAA
GCATCAGCAAAAGGTGGTCCAGCAGCATCCGTGAAACCCGCCACAGCTGCTGCATCCACA
GCAAAACCCGATGAGAACCCAAAGAAAAGCGAGGCGAAACCTGCAACGGCTGAGCTAGTG
CCGGCTCCAGCCACTGACGCCGTTGTGCCAAGGCCAGTGCCTAAGGCCCAGCCGGCCCCT
GAAGCCGAAGTATCGGACGACATGGCGATCGACGAGGCCGACATTGCTGTGGAGGGCGCA
GAAGAGCTTGATCCTGCACTAGAGGAGGAGACGGTCATGGAGGAGACCATCCGCGTGACA
CGCGCCAAGCTAAGGAGGCGCGCCGCCGCCGAGGGGCCCGCGTGAAACTTAGCTGCAAAC
CATTGTTTTATTGGCGCATGGTGTCGTTGCTCCTATTTTTTGAGTTTTATTAGATTGTCA
CGTTGTTTGGTGGGGAGAATATCTGCTGGTCCTTCTGTTTCAGAGTTATCGCCCGTTCCT
TTCGTCTTTCCTGTGGCTATCGCTGGCCCGTTTCTGTGCCTGGAAAAGTTGTAAATATCA
CCGGGCATGTGTATATACAGATTGTTGGCATGTGCTACGAATGCATCTATCCATCCTGAT
TCTGGTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_4542 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g14610.1	334	1e-81	protein\|HVA22, putative, expressed
Brachypodium v1_2	Bradi1g68000.2	328	5e-122
Arabidopsis v10	AT1G75700.1	177	6e-64	\| Symbols: HVA22G \| HVA22-like protein G \| chr1:28423956-28424931 FORWARD LENGTH=177