barSeed - Barley Seed Development Database

Probe CUST_17867_PI390587928

Source Contig U35_4544

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17867_PI390587928	Hv_44K_v2	GTAACTTTCTGATGCCTGTATTTTGAAGCTAGCATTCGCATATGGAAAACCGGTTGTAAA	1715	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.707	1.555	1.311	0.934	0.325	0.323
Raw	342.118	494.011	361.825	400.715	49.297	53.106

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_75997.1	2105	2e-23	2022 - 2079	100	58 / 58	plus	ABC09947
JLOC1	JLOC1_50689.2	1865	1e-23	1732 - 1789	100	58 / 58	plus
JLOC1	JLOC1_50689.1	1863	1e-23	1730 - 1787	100	58 / 58	plus
Harvest21	ABC09947	1789	3e-25	1716 - 1775	100	60 / 60	plus	ABC09947
Harvest35	U35_4544	1789	3e-25	1716 - 1775	100	60 / 60	plus

Contig Sequence (1789 bp)

>U35_4544 1789 Hv_44K_v2
CCAACCAAAGCCACAGCCACACTCGAGTTCGTATCCTGCCGCCGTCTCCGCCCGTCCGCC
GTAGCGTCCCCCCCGGTGAGCCCGCCTCCGGATCTCTGCAAATGTCGGAGAGGAAGCGCC
GGGCGGGGACAGATGCGGCCGAGGGGGGCTCCACCTCGAAGAAACTGCGCGGCGCCTCGG
CCGCCGCATCCTACGCCCAATCCCTCCGCTCGAAGCTCCGCCCTGACGCCTCCATCCTCG
CCTCCCTCCGCGCCCTCGCCTCCGCCGCCTCCAAATCCAAGCCCGCGACCGCCTCCTCAG
CCGGAGCGAAAGCCCTCTCCGAGGACGACCCGGCCTCCGCCTCCTCCAACTACATCGTGG
TCGCCGACCAGGACACCACCTCCGTCACCTCCCGCATCAACCGCCTCGTCCTCTCCGTCG
CGCGAAGCATCCTGGCTGGCCGCGGCTTCTCCTTCGCCGTCCCCTCCCGCACCTCCTCAA
ACCAGGTATACCTCCCGGACCTCGACCGCATCGTGCTCCTCCGCCGCGAGTCCGCGAGGC
CCTTCGCCAACGTCGCCACCGCGCGCAAGGCCACCGTCACCGCGCGCGTCCTCTCCCTCG
TCCACGCCGTCCTGCGCAGGGGCATCCATGTCACCAAGAGGGATCTCTTCTACACCGACG
TGAAGCTCTTCGGCGACCAGTCCCAGTCGGACGCCATCCTCGACGACGTCTCCTGCATGC
TTGGATGCACCCGCTCGTCCCTACATGTCGTCGCCTCTGAGAAGGGCGTTGTGGTTGGCC
GCCTCACTTTTGCTGATGACGGCGACGTCATCGACTGCACGCGAATGGGCGTCGGCGGGA
AGGCCATCCCGCCCAACATTGACAGGGTGTCAGGCATTGAGAGCGACGCTCTCTTCATCT
TGCTTGTGGAGAAAGATGCTGCTTTCATGCGCCTCGCCGAGGACAGGTTCTACAACCGTT
TTCCGTGCATCATATTGACAGCAAAGGGGCAGCCGGATGTTGCCACCAGGTTGTTCTTGC
GCCGGCTTAAAGTGGAGCTGAAGCTTCCGGTGCTCGCATTGGTGGACTCTGATCCATATG
GGCTGAAGATCTTGTCCGTGTATATGTGTGGCTCGAAGAACATGTCGTATGACAGTGCCA
ATCTGACAACGCCGGATATCAAGTGGCTCGGCGTGCGGCCAAGTGATCTGGACAAGTACA
GGGTACCGGAGCAGTGCCGGCTTCCCATGAGTGATCACGATATCAAGGTGGGAAAAGAGA
TGCTAGAGGAAGACTTCGTGAAGCAAAATGAAGGGTGGGTGAAGGAGTTGGAGACGATGT
TGCGAACAAAACAGAAGGCTGAGATTCAGGCTCTCAGCTCGTTTGGGTTCCAGTACCTGA
CTGAGGTATATCTACCCCTCAAGCTGCAGCAGGAGGACTGGATTTAAGATCTCTTCTGAT
GACAGCAGCTGCAGATGATACAGAGAAAGAGCAGCTTGATCGAGGAGCATCAATTTGACA
CTAGTGGGGAGCTAGCTTAACAATACCTCATCTGTACCGTGTAACATCTGTGCGGCAATC
CCTTTGTATGTTTTATGTATTTGAAAAACCGTATGTTGTGTACTTGTGAGACCTGTATTT
GGAAGTATCTGCATCTGTGGAATTAGATGTGACTTTTGTGTATTTGAAAATTCATATATT
GTGTTTTTCTTGTACTTCTGGAGATGGAATTTGGTGTAACTTTCTGATGCCTGTATTTTG
AAGCTAGCATTCGCATATGGAAAACCGGTTGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_4544 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g17610.1	443	protein\|OsTOP6A3 - Topoisomerase 6 subunit A homolog 3, expressed
Brachypodium v1_2	Bradi1g65870.1	439
Arabidopsis v10	AT5G02820.1	427	\| Symbols: RHL2, BIN5 \| Spo11/DNA topoisomerase VI, subunit A protein \| chr5:642658-644123 FORWARD LENGTH=427