barSeed - Barley Seed Development Database

Probe CUST_17865_PI390587928

Source Contig U35_4546

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17865_PI390587928	Hv_44K_v2	TATCTGTAACCACCAGTTGTACACACTGAACATGTAAACAAACCAAGGAACATCACCCGA	1383	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_2171.1	2245	2e-24	292 - 351	100	60 / 60	plus	ABC10197 ABC19539
MLOC	MLOC_2170.6	3936	2e-24	3286 - 3345	100	60 / 60	plus	ABC10197 ABC19539
MLOC	MLOC_2170.1	3946	2e-24	3277 - 3336	100	60 / 60	plus	ABC10197 ABC19539
MLOC	MLOC_2170.4	3286	2e-23	3229 - 3286	100	58 / 58	plus	ABC10197
JLOC1	JLOC1_1306.3	3596	8e-25	3101 - 3160	100	60 / 60	plus
JLOC1	JLOC1_1306.2	3645	8e-25	3150 - 3209	100	60 / 60	plus
JLOC1	JLOC1_1306.1	3727	8e-25	3232 - 3291	100	60 / 60	plus
Harvest21	ABC10197	1443	3e-25	1384 - 1443	100	60 / 60	plus	ABC10197
Harvest35	U35_4546	1443	3e-25	1384 - 1443	100	60 / 60	plus

Contig Sequence (1443 bp)

>U35_4546 1443 Hv_44K_v2
CAGGATCTGCGTACGGGGCTGCTTCTGTAATCCTGGGGCATGTGCCAAGTACCTTGGCTT
GTCGCATTCGGATCTAGTTTCCAACTTTGAGGCTGGGCATGTTTGTTGGGATGATAATGA
CGTAATAAATGGAAAACCAACTGGTGCTGTCAGAATATCATTTGGGTATATTTCCACTTA
TCAAGATGCGGAGGAATTTCTGAAGTTCCTGCAGTCTTCTTTCCTGTCAAAACCAATAGC
ATTCAGCAATGGGCACATGTTGAATATGAGCACTCTTAACTTAGTAGACAATCAGAGTCA
ACAAGTTGTTCCAGATGTTCGCTTACAGTCCATAATTATTTATCCGGTGAAATCTTGCCA
AGGATTTAGTGTGCAGAGTTGGCCGCTGGCCACTGGTGGTTTAAAATATGACAGAGAATG
GCTTCTTCAAGGATCAGGTGGTGAAATTTTGACACAGAAAAAGGTACCAGAGTTGGGCTC
TATTCGCACATTGATTAACCTGGAACTTGGGAAGCTCTTCGTAGAATCACCCAAACGGAA
GGATAAATTGCAGATTTCTCTTCTGGAGAATTTGACTCATTTAACTGCAGAAATGGATGT
GTATGGACAAAGGTACAAGGTAGAAAGCTATGATGACAAGGTAAACACATGGTTCAGCGA
AGCTATTGGGCGTCATTGTACTTTTATGAGATGTTCAAGCTCCAAGAACAGTATCTGCAC
ATCTACTGGCAAGAACGGTCGTTTATGCAGGGATACTCAAAGCAAACTTAGTTTTGTGAA
TGAAGGACAACTGCTACTAATATCTGAAGAGAGTGTCTCTGATCTCAACAGTCGGCTTAG
TTCAAGCAATGGAAATGGTACGCAGCACGTTGTTGTTGATGCAATGAGATTTCGCCCCAA
CATCGTTATCTCTGGCTCGACGCCATACAGAGAAGACAACTGGAAGAGGCTTCACATTGG
AGATGCCTATTTTACTTCCATGGGTGGATGCAACCGTTGCCAGATGATCAACTTGCACCA
GAATGCGGGCCAGGTGATCAAGTCAAAGGAACCGCTAGCAACGCTAGCCTCCTACCGACG
AGAAAAGGGAAAGATTCTGTTTGGTATCCTGTTGAATTACGAAGATGGTTTGGATGGAGA
AGAAGAGACCGTCGCGGAGAGATGGCTCCAAGTAGGGCAAGAAGTGCACGCTTCGACAGA
GTGATTAAGTGTCCAGCTACGCACGCGGAGAGATGTCTATATGTAATATTTTTGTATAGA
GACAGCCTGCCTTTCAACACCGGAAAAAGAAACTAAACGTACAAAACATGTTTAGTTCTA
AGTGTACTCTGTGCAATATTTTTCGCTCATCACTGATTGTTTCTGTGAACAATGCAACAG
TTGTATCTGTAACCACCAGTTGTACACACTGAACATGTAAACAAACCAAGGAACATCACC
CGA

Homology of Contig U35_4546 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g45860.1	825	0.0	protein\|molybdenum cofactor sulfurase, putative, expressed
Brachypodium v1_2	Bradi1g32350.1	582	0.0
Arabidopsis v10	AT1G16540.1	819	1e-127	\| Symbols: SIR3, LOS5, ABA3, ATABA3, ACI2 \| molybdenum cofactor sulfurase (LOS5) (ABA3) \| chr1:5659465-5665201 FORWARD LENGTH=819