barSeed - Barley Seed Development Database

Probe CUST_17861_PI390587928

Source Contig U35_4550

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17861_PI390587928	Hv_44K_v2	TATGGACCGTGAGATATTAGCAGTAGACTCAGAGTTCAATCAAGTTCTGCAAAGCGATAG	755	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364634	3643	2e-24	705 - 764	100	60 / 60	plus	ABC47334
MLOC	MLOC_17878.1	1453	2e-24	507 - 566	100	60 / 60	plus	None
JLOC1	JLOC1_12352.1	1106	8e-25	160 - 219	100	60 / 60	plus
Harvest35	U35_4550	818	3e-25	756 - 815	100	60 / 60	plus

Contig Sequence (818 bp)

>U35_4550 818 Hv_44K_v2
AAAAAACAAAACCAAGATATAAACCAAGGAAACAGGAGAGGAGGCCCGCGCTGCTACTGC
CGCCGCATACCTATCTCCCACCACCTTCGTCCCTCCCTCCTTCGTACCCACAGGCGGCGG
CGGACGGCCGAGATGGCGGCGGCTGTGTCTCGCGACGACGAGCTGGTGGTCAAGTCCCCC
ACCGATAACCGTTCCTACCGCCTTCTTCGCCTCGCCAATGGCCTCTGCGCCCTCCTCATC
CACGACCCTGAGATCTACGCCGACGGCGGCCCTGCCCCCAAGCCCAACGAAGACTTGGAC
ATGGACGACGGGGACGACGAAGAAGATGATGACGAGGACGACGAAGAAGATGACGAAGAG
TATAGCGACGAGGACGGGGAGGACGACGATGACGAAGAAGAAGGCGAGGAGGACGAGGAT
GGGAGCGAGCCCAAGGGGAAGAAGGAAAAGGGCAGCTCCGAGCCGGTCATTAAGAAGGCT
GCTGCTGCAGTGTGTGTTGGAATGGGCAGTTTTGCGGACCCTCCAAAGGCACAGGGCTTG
GCTCATTTTCTAGAGCACATGCTTTTTATGGGGAGCTCTGTTTTTCCAGATGAAAACGAG
TATGACAGTTACCTGTCCAAACATGGTGGTTCATCCAATGCGTTTACTGAAACTGAGTAC
ACATGCTATCATTTTGAGGTGAATCGGGAGTATCTAAAGGGAGCCTTAGACAGGTTTTCT
CAGTTCTTTGTATCACCTCTTGTTAAGGCTGAAGCTATGGACCGTGAGATATTAGCAGTA
GACTCAGAGTTCAATCAAGTTCTGCAAAGCGATAGCTG

Homology of Contig U35_4550 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g21810.1	1041	2e-69	protein\|insulin-degrading enzyme, putative, expressed
Brachypodium v1_2	Bradi1g63160.1	1036	4e-69
Arabidopsis v10	AT1G06900.1	1024	3e-58	Insulinase (Peptidase family M16) family protein \| chr1:2115155-2120635 REVERSE LENGTH=1024