barSeed - Barley Seed Development Database

Probe CUST_17858_PI390587928

Source Contig U35_4553

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17858_PI390587928	Hv_44K_v2	AAGTCTCTTTGTTCCTGAGCACACAGTCGTCCTCTGTAGCTCCAAGTTTTGATAGTGGTA	1043	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.417	1.503	1.185	0.765	0.374	0.353
Raw	4747.583	7844.483	5466.043	5473.260	937.595	964.921

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55628.2	3948	2e-24	28 - 87	100	60 / 60	minus	ABC12241
MLOC	MLOC_55628.1	4470	2e-24	545 - 604	100	60 / 60	minus	ABC12241
JLOC1	JLOC1_35910.1	4049	8e-25	3755 - 3814	100	60 / 60	plus
Harvest21	ABC12241	1201	3e-25	1044 - 1103	100	60 / 60	plus	ABC12241
Harvest35	U35_4553	1196	3e-25	1044 - 1103	100	60 / 60	plus

Contig Sequence (1196 bp)

>U35_4553 1196 Hv_44K_v2
AAACTTCGAAGCTACACTTGCTAGGCAGATCCAAATGCAATTTCATACATCTGTAAAACA
GACTCTTCAGGATGTTTTACGCACTAGCTTTGAATCATTGCTTGTTCCAGCATTACGAAC
AATCTTGTAAGACAATGTTTGAGCAAGTAGACAGTGCATTCCACAAAGGAATGTCTGAGC
ATGCTGTTGCTATTCAGCAGCAGGTTGAGGCAGCACATACTCCATTGGTGCTTACTTTAA
AGGAAACTATTGCTTCCGCGTCCTCAATCTCCCAGAATCTCACATCAGAGTTACTTGATG
GGCATCGCAAACTTTTAGCGCTGGTTACATCTGGCAACGCCAATGCGCAAAATACAAATG
TTTCGCAGCCCAATAATGGTCCTATCACTGGACCCCCAGAGGTCGAGGCGCCATTAGACC
CGATGAAGGAGCTGGGAAGACTGCTATCTGAACACAAATTTGACGAGGCTTTTACAGTGG
CACTTCAAAGAAGTGACGTGTCAATTGTGTCTTGGTTATGCTCTCAGGTTGATTTGCGTG
GGTTATGTACAATGGCTCCAGTCCCTCTGAACCAGGGAGTCCTTCTAGCCCTACTGCAGC
AGCTAGCAGTTGATATTGGCACCGAGACGTCCCGGAAAATTCAGTGGATGACAGATGTTG
CTATGGCGATCAATCCGACAGACCAAGTCATCGCCATACATGTGAGGCCCATCTTCGAGC
AAGTCTACGCCAAGTTGGCTCACCACCGGTCGCTCCCTACCACCAGCCCATTGGATAACA
GCAATCTCCGCTTGCTCATGCATGTCATCAACTCAGTTCTGCTTAGCTACAAGTGATTCT
AAATGGCTGCAGAAACAGCGGGGGAGTATGATGGTCTATTCTTTCTTTGTATAGAGAGAA
AATTTTGAAAAGCAAGGGAAAACTAGAAGGACGATGAAAACTGTCACCAAGAAAAATTGC
AAGGGCCGATGTGCCCCGCTCCCTGGTGTAAATTAGGCTTGTATCGGACTTAAAATTGGA
GTATTTCCATGTGAACTGTCTGCAAGTCTCTTTGTTCCTGAGCACACAGTCGTCCTCTGT
AGCTCCAAGTTTTGATAGTGGTAGCAGCCGTTTGCTGTGGTGAGCGGCTGTTACTCCCAC
CCAAAATATGATTGATGTTGTTTAAAAAAAAAAAAAAAAAAATCGTATTTTTCCAA

Homology of Contig U35_4553 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g49090.1	1340	1e-118	protein\|WD domain, G-beta repeat domain containing protein, expressed
Brachypodium v1_2	Bradi3g56517.1	1375	3e-130
Arabidopsis v10	AT3G13300.1	1344	3e-75	\| Symbols: VCS \| Transducin/WD40 repeat-like superfamily protein \| chr3:4304085-4309949 FORWARD LENGTH=1344