barSeed - Barley Seed Development Database

Probe CUST_17857_PI390587928

Source Contig U35_4554

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17857_PI390587928	Hv_44K_v2	TTGTACACTAGGCTTGTGATATTGTGCTGCTTGTGCACAGTTATGGTCTGTTATTGCATG	1317	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.613	1.547	1.305	0.809	0.260	0.247
Raw	150.304	226.724	166.741	155.642	18.842	18.908

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction
JLOC1	JLOC1_41594.2	2947	4e-23	2881 - 2940	98	59 / 60	plus
JLOC1	JLOC1_41594.1	2959	4e-23	2893 - 2952	98	59 / 60	plus
Harvest35	U35_4554	1398	3e-25	1318 - 1377	100	60 / 60	plus

Contig Sequence (1398 bp)

>U35_4554 1398 Hv_44K_v2
ATGCATCCTAATAACGAGGCACAGTTATATGGGCTGGTGGAGCCTAATGTACACCAGCAA
ATGTTGGCTTCATCTTCTCAGGGGTACACTTCGGTGAATCCAGGAGCAGATAATGCTGTG
CAAGTATTCAGAATGCCAGAATCCAGTGTTCATTCACAAGTTCTTCCTTCTGCATCTGAG
GCTCTAAGTTCACAGCTTGCGAGCAGCAGCCCTATTGCAATGTCTACACAACAGCAACAT
ATGTCCCAGCAACAACAAGCAGCACAGATGTACCCTCCAATGCATGTGCAGCATTATCCG
AATTTCATGCCATATCGACATCCTCTGTATTCTCCAGTTTATGTCCCACCCATGGCTATG
CCAAACTATTCAGCAAATGTCCCTTATCCGGCAAATGGAAATAATTATCTTCAGATGGCC
GGTGGGGGTTCACATTTAACTGCAGGCCAAGTGAAGTATGGAGTTTCACAATATAAACCA
GTCCCAGCTGGTAACCCTTCTGGTTATGGAAATTACACTCATCCAGCTGGTTATACAATT
AGTTCTCCTGGTGTTATTGGAGCTGGAGTTGGTGTTGATGATGTCAATAGGATGAAGTAC
AAGGATAACAACATTTATGCGCCGACCCCACAGGTAGAGACATCTGATATCTGGATTCAG
AATAGAGAGATCCCTACTTTGCAGTGCCCCCCATATTACAACTTATCAGGTCAAGCAACA
CCTGGAGCCTATATGCCAAATCCTGGGAATGCATCTTTCAGTGCTACAGCTCAATCCTCT
CATGCACAATTCCCAGGCATGTACCACCCGCAGCAGCCTCCCTCAATCGTAAGTCCACAT
CCCATGGTGCATCAACAGGTCCCATCTGCCATTGGTCCCAATGTTGGAGTTGGTGTGGCT
GCACCAGGCCCCCAAGTGGGGGCTTATCAACAGCAGCAGCTTGGTCATATGAATTGGAGA
CAGCCCAACTTCTAAACAATGTTTCTTAATTATCTGTAATTAGGGGGGTCACAAGAGCCT
TTAATGTAACAACAATTGGCTCCTTTTAACAGGAACCACCTCTCTTTTTAGTGCAGCTCT
GTCTGATCTATTTAAGGTTTAACAAGTTTTTGTTAGCTTTTCTATTCTCCCATGTGATAT
CAGTATTCCATATGAACTGCTTTTCTTTGCTCCCATGTGAAATCAGTAACCCATGTGAAC
TGGTATGGTATCATGTAGATTGCGAACTAAACATTGAGCTAGGTTCTTGCAAGAGCAAAT
GTGTTGGGTTCAGCGTGTGTGTTCCTGTTTGTTCTTTTCTTAAATCATCAATTATGCTTG
TACACTAGGCTTGTGATATTGTGCTGCTTGTGCACAGTTATGGTCTGTTATTGCATGATA
TAAAAAAAAAAAAAAAAA

Homology of Contig U35_4554 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g10430.3	855	9e-141	protein\|protein of unknown function DUF1296 domain containing protein, expressed
Brachypodium v1_2	Bradi1g46360.1	851	4e-152
Arabidopsis v10	AT3G13990.1	848	1e-58	Kinase-related protein of unknown function (DUF1296) \| chr3:4625708-4630383 REVERSE LENGTH=848