barSeed - Barley Seed Development Database

Probe CUST_17850_PI390587928

Source Contig U35_4561

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17850_PI390587928	Hv_44K_v2	CTTGAGTGACAGGTCTGGGCTAGTAATTTGAGGTACTGTTATGGTTTAAAAAAGAAAAAA	1189	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.028	1.678	1.000	0.908	0.381	0.456
Raw	1024.117	1347.078	692.355	1015.902	146.556	188.569

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_4561	1255	3e-25	1190 - 1249	100	60 / 60	plus

Contig Sequence (1255 bp)

>U35_4561 1255 Hv_44K_v2
CACGCTCGCGCTCGGCCGCCGCCGCTCAGCGCTCGCGGCTCGCCCTCCCCGGAGCTCCCT
CCCATCGCCACGAGCCGCCTTCGACCGTCGTGAGTCCCCTGCTCCTCCGCTCCAGGACGC
AGCCGGACCTCGCGCCCGAGGGCCTCGCCGACCTCGAGCCGCCGCTCGACCTCCCCGATC
CCGACGACGCCGCTTCCTCCACCGTCGTCTCCGCCCCTTCCCTCAACGCGATCGCTGCTC
CCACCCTCTCCGCCTTTACCCAGATTTTTTTTTTGAGTGTCCGCACCCTTGTTTTTGTTC
CTGGGTCCACCACTGCTGGAGGCAGCGATGCTGCGGGCAGTGCTGCGCCGGGGAGGGACA
GCCATGAGGCAGGCAGCGTTGTCTGAGGGATCTACACGGAACCTTCTACGGCTGAGCGTG
GCGGAGCGGGAGCGCTCTCGGCGGCGTCGGCGCGACCCAGGGCGCGACGAGTTCTTTGTG
CCGACGCCGGAGTCGCTTAAATGGCTCGACTCCGTCACCCTTCCCATGATCCTCACTGCT
GCTGCCGTAGCCCTCTTCACCAAGCTGCTCATGATGGAACATGAAGCTACAGACCAAGAA
AGGAGAGAACGCAAGATAAAGAATAGTCACCCTGAGCAAGGAACAGTAAGGATGCTTTCA
CGTGAAGAGTGGGATGAAATCCAAGAAGTCAGACCAAGGACCCCTTTTGAATCAAAGTTA
GCTCGTCCACATGCCCGCTTAAGAACTGGAGAAAACGTGCGGCTGGAGGATGCCAAGGAT
TGGGCCGTTGATGTGCTCACTGATGCATTTACTAGAGCGGAAGAGAGTGCTAAGCGGAAA
TGATTCAGAAGAAAGGCACTTCGAAGTTTTGTTTAGAGGAAACACTGTGGGGTTCTCTTG
AATGCACGTTTCTTGTTGTCTTTTGAAGTTTGAGTTCCTGACTCCTGGTAAATGCTAACC
TCCGCGGTGAGCTATGGTAGCCGCTTAGAATATATGTTTTCCTTGCTGCAATAAATTTTC
CGATATACGATTCTTTCGGTCTGTACAGAACCTTCTCCCTGTCAATTCGATGACCTGAAG
TTGATATCGTTTGTTTGGATGCAAACTAACAGTAGTAGTGGATTGTAAGTGAAGGGAAAG
AGGGGCTGTATACTTTCAACAGTTCCGTTTAGATCTCAGCCATTCATGCCTTGAGTGACA
GGTCTGGGCTAGTAATTTGAGGTACTGTTATGGTTTAAAAAAGAAAAAAAAAAAA

Homology of Contig U35_4561 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g30140.1	180	3e-70	protein\|expressed protein
Brachypodium v1_2	Bradi4g33100.1	172	3e-86
Arabidopsis v10	None