barSeed - Barley Seed Development Database

Probe CUST_1784_PI390587928

Source Contig U35_6207

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1784_PI390587928	Hv_44K_v2	CACCGTGATTGTACTACGAACTAAACCCAACGATTTTGCTGAAATATTATAGTACAAAAG	818	GeneList: saddlebrown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.185	0.221	0.854	1.895	1.455	1.629
Raw	117.134	220.947	754.121	2571.783	706.503	851.312

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_35630.2	1221	8e-25	918 - 977	100	60 / 60	plus
JLOC1	JLOC1_35630.1	1301	8e-25	998 - 1057	100	60 / 60	plus
Harvest21	ABC16000	903	3e-25	822 - 881	100	60 / 60	plus	ABC16000
Harvest35	U35_6207	901	3e-25	819 - 878	100	60 / 60	plus

Contig Sequence (901 bp)

>U35_6207 901 Hv_44K_v2
TGAGAAGAAGAGGCTGCCACCAGCCTCAGTTCCTCTCCCTCCAAGGTTGCCACTGCCAAA
ATAGGAGGCATCTCCAGATCTTCCCCGTCCTACACCCAGCTCGCCTTCTGCTCCAGGCAT
GCTTTCCACAAGATAGGAACCGCTGCAGCTCCGCAGAGGCCTCAGAGCGAGCTCAAGCAT
GCAAGACCCTGCGCGACCACGGACAACGACCGGGCGGCGCCGGTGGAGGCGCAGGAGGAA
AGCGCAACCATCAGCGCCGGCGTGAACCCGGTGGCGTCCGGCAACGGCCAGCAGCCGCAG
CCGGGCGAGCCGCCGAAGCGGGTGCCGCTGACGGCTCGGGAGCGGCTACGCGCGGCGCGC
GTGCTGGGCAAGTACGCGGAGCCGGGGGGCGGCGGGGCGTCGCCGGCGGACAAGAAGGGC
TCGTCGTCGTCGTCGTCGTCCAAGCCGGAGTTCGGGAGCCGGGTGCTGGACGCGCTGCGG
GAGACGGACGGCGGCAAGAAGGGCGGGCGGAAGCGGTCGGGGCTGCCGGAGGCGCCGAGC
AACCTGCTGGACGACACCAAGCGCGGCATGCCCAAGGAAGGGTGGACGTTCGACTGGCTG
GCGGCGCTGCCCGTGGGCACGGACGTGCTCATCGTCGCGGCGTCCTTCGGGATCATCACC
ACCGTCATGTTCGGCACCACGTACGTGGTGTGGAAGCTCGGCGCCATACATTTCAACGAG
TACTGATAGTTATATAAGCCTGTCTAGCTTTTCTCTGCGTGGTTCTGTACAATAATGCCG
TCTATCGTATGATGAGGCAGATTTTGAGCACATGAATACACCGTGATTGTACTACGAACT
AAACCCAACGATTTTGCTGAAATATTATAGTACAAAAGTTTTACAAAAAAAAAAAAAAAA
A

Homology of Contig U35_6207 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g65467.1	255	3e-84
Arabidopsis v10	None