barSeed - Barley Seed Development Database

Probe CUST_17849_PI390587928

Source Contig U35_4562

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17849_PI390587928	Hv_44K_v2	TCTTTCGGTCTGTACAGAACCTTCTCCCTGTCAATTCGATGACCTGAAGTTGATATCAAA	851	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.886	1.631	0.943	0.878	0.372	0.355
Raw	2000.110	2679.607	1374.477	2069.771	298.820	312.603

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354986	1344	7e-23	1106 - 1162	100	57 / 57	plus	ABC11310
MLOC	AK371111	1204	7e-23	946 - 1002	100	57 / 57	plus	ABC11310
Harvest21	ABC11310	1100	2e-21	1032 - 1084	100	53 / 53	plus	ABC11310
Harvest35	U35_4562	925	3e-25	852 - 911	100	60 / 60	plus
Harvest35	U35_4561	1255	1e-23	1032 - 1088	100	57 / 57	plus

Contig Sequence (925 bp)

>U35_4562 925 Hv_44K_v2
CCCGGGCTGCAGGGAAGCGCCGGCGAAAACGACCGCCGCCGCAGCCGAGGGGAATCAGGA
GAGCAGCGCAGCATGCGTCGTTAGGTGCTCCTGGGAGCGAGCGAGCGGACGGCGACTGAC
GCGCACCTCCCCTAAGACGGCTCCAGTTCCCTCGCCCTGTTGTCCCGTCTAAATCGCCGG
CGGCGTGGACGCAGCGATGCTGCGGACAGCGCTGCGCCGGGGAGGGGCGGCCATGAGGCA
GGCCGTGCTGGACGAGGGATCCACGGGGAGCCTTCTACGGCTGAGCGTGGCGGAGCGGGA
GCGCTCTCGCCGGCGTCGGCGCGACCCAGGGCGCGATGAGTTCTTCGTGCCGACGCCGGA
GTCACTTAAATGGCTCGACTCCGTCACCCTGCCCATGATCCTCACCGCCGCCGCCGTCGC
TCTCTTCACCAAGCTTCTCATGATGGAACACGAAGCTACAGACCAAGAAAGGAGAGAACG
CAAGATTAAGAATAGTCACCCTGAGCAAGGAACAGTAAGGATGCTTTCACGTGAAGAGTG
GGATGAAATCCAAGAAGTCAGGCCAAGGACCCCTTTTGAGTCAAAGAGGATGCCGAGGAT
TGGGCCGTTGATGTGCTCACTGATGCATTTACTAGAGCGGAAGAGAGTGCTAAGCGGAAA
TGATTCAGAAGAAAGGCACTTTGAAGTTTTGTTTAGAGGAAACACTGTGGAGTTCTCTTG
AATGCACGTTTCTTGTTGTCTTTTGAAGTTTGAGTTCCTGACTCCTGGTAAATGCTAACC
TCCGCGGTGAGCTATGCTAGCCGCTTAGAATATATTTTTTCCTTGCTGCAATAAATTTCC
CGATATACGATTCTTTCGGTCTGTACAGAACCTTCTCCCTGTCAATTCGATGACCTGAAG
TTGATATCAAAAAAAAAAAAAAAAA

Homology of Contig U35_4562 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g30140.1	180	1e-52	protein\|expressed protein
Brachypodium v1_2	Bradi4g33100.1	172	4e-65
Arabidopsis v10	None