barSeed - Barley Seed Development Database

Probe CUST_17847_PI390587928

Source Contig U35_4564

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17847_PI390587928	Hv_44K_v2	GTTGTATTATAGCCCCTATGGTGGATGTAATAACTTGTATCGAATACGAAATTTCTCACA	942	GeneList: royalblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.905	2.234	0.617	0.715	0.963	0.858
Raw	14.029	25.793	5.474	8.263	3.336	2.733

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC10081	1002	3e-25	943 - 1002	100	60 / 60	plus	ABC10081
Harvest35	U35_4564	1002	3e-25	943 - 1002	100	60 / 60	plus

Contig Sequence (1002 bp)

>U35_4564 1002 Hv_44K_v2
GGACAAGCTGGTGGCCTGGGGTGCGAGCCCGGCCAGGTCACCTACGCCTCGGCGATCAAC
GTGTACTGCCGGCTGGGGCGGAGCGACAGGGCGGAGGCCGTCTTCTCGGAGATGATCGAC
CGGGGCTTCGACAAGTGCGTGGTGGCGTACGGCAACATGATCTCCATGTACGGGCAGATC
AGGAGGGCGTCGGACGCCACGAGGCTGCTGGCGCTGATGAAGCAGAAGGGGTGCGAGCCC
AACGTGTGGGTGTACAACTCGCTCCTGGACATGCGCGGCAAGCTCGGGGACTCGAGGCAG
GCCGAGAAGATATGGAAGGAGATGATGCGGCGCAAGGTGCAGCCTGACCGGGTGAGCTAC
ACGGCCATCGTCGGCGCGTTCAACCGGTCGGGGGAGCTCGACCGGTGCATGGACTACTAC
CAGGAGTTCAGGGAGACGGGAGGGACGGTGGACAAGACCCTGGCCGGCCTCATGGTGGGG
GTGTTCTGCAAAACCAGCCGGTTCAACGACCTCATCCAGCTGCTCAGGGACATGAAGGTG
CAGGACACCCAGCTGGACAGGAGGCTGTACATGATCGTTCTCAACAGCCTCCGAGAAGCC
GGGCTGGAGGTTCATGTCAGGTGGCTCCAGGATTACTTCAATTCCGTGGAGGAGAAAACC
TGATTTCACGCTCCACGAGTTCCTGGTGCTCATCTTCAGCATCGGAGCATGAGGATTTGG
GTGTCTGGAGAAAGGCACTGCTCTGTAAATTTGAAGCAAAATAGGTAAATATTTGCTTGC
CTCCATGCTCCTTGAATCGTGAAGAAATTGACACTGTAAATGTATTGTAGAAAATGGCAC
CATTGTACCACCAAAATGATCTGATTCCAGATTTACCGGATAAGCTGTATAGCTCAATAA
TCCTGCATTCATGTCGGATTCGATGATACCCTTGTACATACAGTTGTATTATAGCCCCTA
TGGTGGATGTAATAACTTGTATCGAATACGAAATTTCTCACA

Homology of Contig U35_4564 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g49350.1	607	3e-120	protein\|PPR repeat domain containing protein, putative, expressed
Brachypodium v1_2	Bradi5g19320.1	613	1e-135
Arabidopsis v10	AT5G13770.1	609	2e-88	Pentatricopeptide repeat (PPR-like) superfamily protein \| chr5:4445461-4447290 FORWARD LENGTH=609