barSeed - Barley Seed Development Database

Probe CUST_17846_PI390587928

Source Contig U35_4565

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17846_PI390587928	Hv_44K_v2	GAGAGTGACTGTTATGCCATTTTTGCATAGTTTACTGAATTTTGTTGGGTTTTGTTGAGT	1653	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.058	2.581	1.646	0.892	0.322	0.427
Raw	23.205	94.923	48.785	46.525	3.435	6.666

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_39060.2	1795	8e-25	1698 - 1757	100	60 / 60	plus
JLOC1	JLOC1_39060.1	1577	8e-25	1480 - 1539	100	60 / 60	plus
Harvest21	ABC10995	1542	3e-25	1466 - 1525	100	60 / 60	plus	ABC10995
Harvest35	U35_4565	1730	3e-25	1654 - 1713	100	60 / 60	plus

Contig Sequence (1730 bp)

>U35_4565 1730 Hv_44K_v2
CCTTTCCCACAGTCGATGGAACCATGGAGAAGCCGTTCTTGTCCGGCTCGTCGACGCGAC
GAGACTGCCGCTCCAACACCTGGCCCGCGGGCAGCCTCACGCACGCCGGACCCCGCCACG
TCGCCGGCCTCAGAGCTCACAGTCATCCACAGAAATATCGGAGCGAGCTACGCGAGTAGC
AGCGCCTACTTTCTACCAGCGACCATTCCGTCTTTTCCACCAGTGACCATTCCACTCCAT
CACATGGGTCAAGACGAGCGCCAGGATCCAGAGCTGCCGGTCATGGACAAGGAGCTCTCC
GGCGACGCGGTAACCTGCGACTACTGCAGCGGCCCACAGGCGGTGGTATACTGCCGGGCC
GACAGCGCCAGGCTCTGCTTGCCGTGCGACCGCCACGTGCACGCCGCTAACGCAGTCTGC
TCCCGCCACCTGCGCGCCCCGCTCTGCGCCGCATGCCGCGCCACCGGGGCCGTCTTCCGC
CACGGCGGCCCCGAATTCCTCTGCTCCAACTGCGACTTCGCGAGGAGCCGGGACGGCGAG
CTGCCGCTGCACGACCGATGCACCGTCCAGGGGTATACGGGACGACCGTCGGCGCACGAG
CTCGCCGCTCTTCTCGGGGTCCCCGACTTGGACAAACCCTCGGCCGCCAAAGCCGACGAC
GGTTGGTGGGCCATCTGGGAGGAGCCCCACGTGTTCAGCCTGGAGGATCTCATCGTGCCC
ACCACTTCTTGCCATGGCTTCCAGCCCCTCGTCACGCCCTTGTCCCCAAAGATCCACAAC
TCGTCGCCCAATGGAAAGACGAATGATGAGGTCATACGGCAGTTACATGAGCTCGCGGAG
GTCGACATGGGCGGCGGTCAGATAACACCTCGTGAGGAGGCAGAGCAAGCTGCTCATCAG
TTGCCTTCCTGGACACAGCCACACTACACTGCTGGAAATGGCGATTTTGGCACAGATAAC
AGCCATGAGGTTGCAACCATGCCAACCCCTGGTTACGAGAATGGTGGATGGAACAACAGC
AATCATCATGCCTTAAATGATGCCTGCAAGGCCGAGTACGAACAGGAGCAGGCTCCAGCA
AGCTCAGCTGAAGCATGCTTGTCATCGTTTGTTCAAATGCCAGAACTTTGCCCCAGCATG
AGCAATGGAAGTATGATGGACGATAGCCAGCAGGCAAATCCTGGTATTGGTATGCCAATG
CAAGCTTTCCCCAAAAGAAGTGGCTTTGATGTTGTTGCTGGCCCTGACCGCGACATTGTC
ATTTCCCGCTATAAAGAAAAGAGGAGGACAAGAAGATTTGACAAACAGGTCCGATATGAG
TCCCGCAAAGCTCGTGCAGACAGCAGGTTGAGGATCAAGGGGCGTTTTGCGAAGGCAAAT
CAGAGTTAAGCCTTGACTTTGCAGTATATTTTGCATATTGGACATATGGAAGAACACTAA
TTAGGAGTGAGTGCAGATGGGGCAGAAGGCGTGAACATTTTGTTTGCCTTCAGTTGGGCA
GATGGTAGCTCGTGTACAATCTGAATAATGTATGTTGCCAACATATGGCTATATTAATGT
TTTGAGGGGAGTTGTTCTTAGTCCAACCCTTGTATATAGTTTCCATCTATGAACTCTGTA
AAAGTTTGTACTACAGGCAAATGAGAGGCAAATGAGAGTGACTGTTATGCCATTTTTGCA
TAGTTTACTGAATTTTGTTGGGTTTTGTTGAGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_4565 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g22770.1	404	1e-168	protein\|CCT/B-box zinc finger protein, putative, expressed
Brachypodium v1_2	Bradi1g62420.1	379	0.0
Arabidopsis v10	None