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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_17845_PI390587928Hv_44K_v2AGGAGCTTAACCTGATAACCTGCAGTGACACCTGAGGATCAACAACCTGTTATTGTTAAA654GeneList: blue
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.3511.3681.0130.9490.4930.534
Raw 7248.04011359.4037442.78011011.3501999.1372367.043



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_57824.27499e-22589 - 6469857 / 58plus ABC12294
JLOC1JLOC1_37544.29195e-22720 - 7779857 / 58plus
JLOC1JLOC1_37544.111465e-22947 - 10049857 / 58plus
Harvest35U35_45667283e-25655 - 71410060 / 60plus



Contig Sequence (728 bp)

>U35_4566 728 Hv_44K_v2
GCTGCAGCCGCCGCCCCGTCCATGTTCTGATCGGCTTCGCCACCCACGTCGCGCCGCGCG
CCACCGCCGCCGCCGCCGCCCTGCGCTGTCCGCTGCATCTCCGGCTCGCCGCGCGGTACG
CCTCCAGTCCCACATTCTCTCCGAGAGAAACCAGCGACAATGGTGATCCCTCCACCCGAC
AGGGCAGCTAGAATTGTCGGTTTTCTCAAGCCCTACCTTTTGAGGATGCATTTCTCGAAC
AAGTATGTGACCGCACAGGTGATCCATACCCCAACAGCGACCGTCGCGTGTTCTGCGAGC
TCACAGGAGAAGCTGCTGAGGCCGAACTTGGAGTCGACCCGCGACGTCTCTGCCGCGGCA
AAGATTGGGAAGCTGCTGGGCGAGCGCCTGCTGATCAAGGGGATTCCTGCCGTGTCCATC
CACATGAAGAGAGAGCAGAAGTACCACGGGAAAGTCAAGGCTGTTATAGATTCTGTCAGA
GAAGCTGGTGTCAAGCTGTTGTGATGGTGAAAACATAGATGTCGGCTTAGCATTTGCGCA
GTCTTGAGCTGTATTTCTGACGTTTGGACTGATTGCGGCAACTTTTGTGTTTATAAATTC
GGCGTTGAACAAACGTTTGTCCAGGCCTCGGGGTCAATAAAAGGACAGTGTTGTAGGAGC
TTAACCTGATAACCTGCAGTGACACCTGAGGATCAACAACCTGTTATTGTTAAAAAAAAA
AAAAAAAA



Homology of Contig U35_4566 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os01g15290.11153e-67protein|ribosomal L18p/L5e family protein, putative, expressed
Brachypodium v1_2Bradi2g09160.21152e-68
Arabidopsis v10AT5G27820.11141e-53Ribosomal L18p/L5e family protein | chr5:9860584-9860928 FORWARD LENGTH=114