barSeed - Barley Seed Development Database

Probe CUST_17840_PI390587928

Source Contig U35_4571

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17840_PI390587928	Hv_44K_v2	CTTAGATGTATCGAAGAATCTTCATAGACTTGCACCTCAGTGATTATTTCCATCTATTTG	1165	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.408	1.293	1.245	0.918	0.389	0.376
Raw	907.253	1348.739	1098.530	1251.789	188.971	199.594

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_69206.5	1728	7e-23	1616 - 1675	98	59 / 60	plus	ABC11446
MLOC	MLOC_69206.3	2088	7e-23	2017 - 2076	98	59 / 60	plus	ABC11446
MLOC	MLOC_69206.4	1979	7e-23	1908 - 1967	98	59 / 60	plus	ABC11446
MLOC	MLOC_69206.1	1798	7e-23	1727 - 1786	98	59 / 60	plus	ABC11446
JLOC1	JLOC1_45847.4	2117	4e-23	1803 - 1862	98	59 / 60	plus
JLOC1	JLOC1_45847.3	2150	4e-23	1836 - 1895	98	59 / 60	plus
JLOC1	JLOC1_45847.2	2144	4e-23	1830 - 1889	98	59 / 60	plus
JLOC1	JLOC1_45847.1	2148	4e-23	1834 - 1893	98	59 / 60	plus
Harvest35	U35_4571	1242	3e-25	1166 - 1225	100	60 / 60	plus

Contig Sequence (1242 bp)

>U35_4571 1242 Hv_44K_v2
GGTGATGGTGGGAGTGGCCGTGGTTTTGATGACCACCGTGGTGGGAGCGGTGGCAGTTAT
GGGGGAAGAGGCCAAGAGAACAACCAAGGTGACGGTGGCTATGGACAGGCTCCCCCTAAA
GGCCCTCCATCCTATGGCGGTCCTCCAGGTGATTACGCACCGCCCCCAAGTTCCTATGGA
GGCAACAATGTGTACAGTTCAGAGTCTGCAGTGCCACCCCCTAACAGCTATGGCAGCGGT
CGAGGCTCTTACCCACCAAGCTATGGTGCCCCACCTCCGAACCCATATAGTGGCGGTGCC
CCAGGGGGGCAAGGAGGCCTGCCACCTACATATGATGGTGGTTATGGTGCTCGGTCTGTG
CCTGGGGGTGGAGGCGCAGGTGGTGCTCCACCACCTTATCAAGGTGGTGGCGGCGGTTAT
TCTGCAAATGCTGCCCCTGAACCTACTACAAAGGTTAAGCAGTGTGATGCAAACTGTGAT
GATTCCTGCGACAATGCAAGGATTTACATCTCAAACCTGCCCCCTGATGTGACTGTTGAG
GAACTGCAAGAGCTTTTTGGAGGAATTGGCCAGGTTGGAAGGATCAAGCAAAAACGTGGC
TACAAAGACCAGTGGCCCTGGAACATAAAAATCTACACTGATGATTCTGGAAAAGCCAAA
GGAGATGCTTGCCTTGCTTATGAAGATCCTTCTGCTGCTCATTCAGCTGGTGGATTCTAC
AATGATTATGACATGAGAGGCCGTAAAATTAGTGTTGTGATGGCTGAGAAATCAGCACCT
AGAGCTCCTACATCTGGTCATGGAGGTGGACGTGGTGGTGGAGGCGGCTATGGCGGGGAT
AGACGCAGAGATGGAGGAGGCTATGGCGGGCCTAACAGAAACCAGGGCGGTGGTTCACGA
TCGCGACCATACTGAAAACAGTCATATAATTACTAAGATTGTCATCTGCAAGAAACCATT
TATATTCATGTTCTCTCTGGACTTGTACTCATACAGGAGAGCGTAAGCTGGATAACCTCC
AAATGCTGATATGTTTGAGATGTTATTACAGCCGGTGGATCACTGCTGTAAGCTTTGGAT
TTTGCTTTGGAGAACAGGTAGGGCGTTTTTGTTGTGTGGTTGATTTGCTCCCAGGATAGT
CTGCTAGTGACGTGGTTCTGTGAATCTTAGATGTATCGAAGAATCTTCATAGACTTGCAC
CTCAGTGATTATTTCCATCTATTTGTAAAATTTAATTTACTT

Homology of Contig U35_4571 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g07070.2	500	5e-60	protein\|transposon protein, putative, CACTA, En/Spm sub-class, expressed
Brachypodium v1_2	Bradi2g03940.4	474	3e-63
Arabidopsis v10	AT5G58470.1	422	2e-53	\| Symbols: TAF15b \| TBP-associated factor 15B \| chr5:23638566-23640854 REVERSE LENGTH=422