barSeed - Barley Seed Development Database

Probe CUST_17837_PI390587928

Source Contig U35_4574

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17837_PI390587928	Hv_44K_v2	CATTGATCCGGATGAACATCAAGACCAGTTTGATGTATGTTATACATACATATGTCGATT	2027	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.393	2.083	1.435	0.859	0.229	0.287
Raw	508.848	1207.882	707.598	687.795	61.733	84.972

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354763	2118	2e-24	1987 - 2046	100	60 / 60	plus	ABC10438
MLOC	MLOC_11046.1	1649	2e-24	1544 - 1603	100	60 / 60	plus	ABC10438
JLOC1	JLOC1_7275.1	1751	8e-25	1569 - 1628	100	60 / 60	plus
Harvest21	ABC10438	2136	3e-25	2028 - 2087	100	60 / 60	plus	ABC10438
Harvest35	U35_4574	2137	3e-25	2028 - 2087	100	60 / 60	plus

Contig Sequence (2137 bp)

>U35_4574 2137 Hv_44K_v2
GATCCCACGGATCCTCCACTACTCCCCCGCCCCTCAGAGAAACACAACTCCGCCGCACCA
GATCAACCCGCCGCGAGCGAACGAGTCCGCCGCGCGCTCGGCCGTGGGGAACGCCGGCCG
CCTCGACCGCGCTCAGAGCTCCGCAGGACCCTCTCCTTCTCTCCCGCTCACAGCTCGTTT
TTTTTTCTTGTTGTTGTCGTTGTTATCACTGATTGCGATCTCGATTCTTGATTCTCGTCC
GCGTCCGCGCTGCTAATCCCGACGTGTTCTTTCTTTTGGTAGAAAATCGGACCCTCTCCG
CGTTAGGGTTTTCCGTTACATACTCGTCTGCCTGCGAATCCATTGCTCGATCTAGGGTTA
TTGCCTCCGCGCCGATCCATACCGCCGCCGTTTCTTGTTTGTTCTGATCCATCGACGCAG
GTTCCTACTTGATGTCGCCGGAGAAGAGCGGCAGGCGGGGCGCGCCGGTCGCGCGGCCGC
CGCTCCGGGAGGCCGGCTCGACGCCCTCGATGCCGCCGATGCTCCAGGAGCCCGGGTCGA
GGCCTAGGCCCTACATGCCGTCCCTCTGCTCCACGCCCCGCAACCCTGCCGTCAAGTGCT
ATGGCGACAGGTTCATCCCGGACAGGTCGGCGATGGACATGGACATGGCGCACTACCTCC
TGACGGAGCCGAGGAAGGACAGCAAGAACGCGGTGACGCCGTCGCCGGCCAAGGAGGCGT
ACCGGAAGCTGCTGGCGGAGAAGCTGCTCAACAACCGCACCAGGATTCTCGCTTTCAGGA
ACAAGCCGCCGGAGCCTGAGAACAGCATGCTCATGGAGCTCCATGCTGATGCGGCCTCCA
TCCAGGCCAGACCGGTGAAGAAGCGTCGATACATCCCTCAGTCCGCAGAGAGGACTCTGG
ATGCGCCAGACATCGTTGACGATTACTACCTCAACCTGCTGGACTGGGGAAGCGCCAATG
TGCTGTCCATTGCACTGGGGAACACGGTATACCTCTGGGACGCTGCAAGTGGGTCTACAT
CCGAGCTTGTTACCATTGGTGAGGACGATGGCCCTGTCACTAGTGTTAGCTGGGCTCCTG
ATGGCAACCACATTGCTATTGGCCTCAACTCCTCAGCCGTCCAGATCTGGGATTCTAGCT
CTAGCCAACTGCTGAGGACACTGCAAGGTGTGCATGAGTTGAGAGTCGGTTCACTGGCAT
GGAACAAGAACATCCTGACCGCTGGTGGTATGGACGGCAAGATTGTGAACAATGATTTGA
GGATTAGGAACCATGCTGTGCAGACATACCGCGGGCACGAGCAGGAGGTGTGTGGCCTCA
AATGGTCCGGATCAGGGCAGCAGCTGGCCAGTGGTGGCAATGACAACCTCCTCCACATAT
GGGATGTGTCTATGGCATCCACTGCACAATCTGCAGGCCGCACCCAATGGTTACACAGGA
TGGAAGACCACTCAGCTGCTGTGAAGGCGCTTGCATGGTGCCCGTTCCAGAGCAACCTGC
TGGCATCAGGTGGTGGCGCAAATGACCGTTGCATCAAGTTCTGGAACACACACACGGGCG
CATGCCTCAACTCAGTCGACACCGGGTCACAAGTGTGCGCACTGCTCTGGAACAAGAACG
ACAGAGAGCTGTTGAGCTCGCATGGATTCACTCAGAACCAGCTCACGTTGTGGAAGTACC
CGTCGATGACTAAGATGGCCGAGCTCAATGGCCATACTTCCCGTGTCCTCTTCATGGCTC
AGAGCCCTGATGGTTGCACGGTGGCATCTGCGGCCGCAGACGAGACCCTGCGCTTCTGGA
ATGTGTTTGGGACTCCTGATGCTCCCAAGTCTGCAGTGAAAGTGAAGACCCCCCAGAGCA
GAATGTTCAACAGTTACAATCACCTACGCTAGGGAGGGATCAGGTCCCGGCAAGTGCTGC
AACGCTGACAAGAATTAGCAGGCTGATTTTACGTAGAAATTCTTTGTGTGTACTGAAGTG
TTTTGTGCGTGCTTCAGTATGCTGGTAACTTTAGTTGGTATATTTTACATTGATCCGGAT
GAACATCAAGACCAGTTTGATGTATGTTATACATACATATGTCGATTATATATAAGTATA
ATGACATTGGTGTTTTTTTAAAAAAAAAAAAAAAAAA

Homology of Contig U35_4574 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os04g51110.2	475	protein\|WD repeat-containing protein, putative, expressed
Brachypodium v1_2	Bradi5g20500.1	475
Arabidopsis v10	AT4G33270.1	457	\| Symbols: CDC20.1 \| Transducin family protein / WD-40 repeat family protein \| chr4:16044545-16046590 REVERSE LENGTH=457