barSeed - Barley Seed Development Database

Probe CUST_17833_PI390587928

Source Contig U35_4578

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17833_PI390587928	Hv_44K_v2	GTCCTTCCTTACCTGTTGTGATTTGTGAATGTATCTGGTAATTAACTCAGAGGTGGTTGA	1311	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67781.1	4549	2e-24	3141 - 3200	100	60 / 60	minus	ABC10074 ABC11411
MLOC	MLOC_67781.3	1764	2e-24	29 - 88	100	60 / 60	minus	ABC10074
MLOC	MLOC_67781.2	1316	2e-24	29 - 88	100	60 / 60	minus	ABC10074
MLOC	MLOC_67780.1	2129	2e-24	1183 - 1242	100	60 / 60	minus	ABC10074 ABC11411
JLOC1	JLOC1_44789.4	2888	8e-25	1368 - 1427	100	60 / 60	plus
JLOC1	JLOC1_44789.3	2934	8e-25	1414 - 1473	100	60 / 60	plus
JLOC1	JLOC1_44789.2	3157	8e-25	1637 - 1696	100	60 / 60	plus
JLOC1	JLOC1_44789.1	3659	8e-25	2139 - 2198	100	60 / 60	plus
JLOC1	JLOC1_44788.1	4216	8e-25	1186 - 1245	100	60 / 60	minus
Harvest21	ABC10074	1371	3e-25	1312 - 1371	100	60 / 60	plus	ABC10074
Harvest35	U35_4578	1371	3e-25	1312 - 1371	100	60 / 60	plus

Contig Sequence (1371 bp)

>U35_4578 1371 Hv_44K_v2
GGCCTTCTCCGCCCATAATCTTTCTCGGTCCAAGGAAGATTCCACCGGACAGGGCCAGAG
GAGAGGATCTCGAAGGGAGAATTCGGGGGAGAGAAATGTTGATTGGAGCTAAGTGATACC
GTCATATAACGCTAAAACTTGTGCGTACAATGGAGGATCATCCTGGCCATCCTATTTCCA
ACTATGATTTCCTGTCAGGGAATGGCTGTCATTCGAAGAAATTAGTTGATAAGAATTACG
ACCAGGACTCCTCATCAACCAAGTCTGACCGGTCACAACAAGAAGCACCTGCAATGACTG
ACAGTAGTCTAAATGAGCAACACGTCTCAAGACCCTCATCACAATCTGACAATGACAATG
ATCATGGGAAGCCTGATCAGCACATGATAAAGTCACTGTTATCTTTGGGGAACCCAGATA
CTGTTGCTCCCCCTCCAATGCTTGCCTGTAGCCAATCATTTGCATATATTCCTTATCCTG
CTGATGCTTACGCTGGGGTCTTTCCAGGATATGCCTCACACGCTATTGTTCATCCCCAAT
TAAATGCTGCAACAAACTCTCGTGTGCCGCTCCCTGTTGAGCCTGCAGCAGAAGAGCCAA
TGTTTGTTAATGCGAAGCAATACCATGCAATTCTTAGGAGGAGACAGATACGTGCTAAAT
TGGAGGCCCAAAATAAGCTGGTGAAAGCCCGGAAGCCATACCTTCATGAATCTCGGCACC
GCCATGCCATGAAGCGAGCTCGTGGAACAGGAGGGCGGTTCCTCAACACAAAGCAACTCG
AGGAGCAGAAGCAGAAGCAGGCTTCAGGTGGTGCAAGCTGTACAAAGGTCCTTGGCAAGA
ATACAGTCCTTCAGAGTAGTCCCACCTTCGCACCTTTGGCATCAGCTCCTTCCAACATGT
CAAGCTTTTCAACAACCGGCATGCTGGCTAATCAGGAGCGCGCCTGCTTCCCCTCACTTG
GCTTCCGTCCCACGGTTAGCTTCGCTGCACTGAACGGCAACGGGAAGCTGGCCCCGAACG
GCATGCACCAACGCGCTTCCATGATGAGGTAAAGCAAAGCATCCTCTGGTGCGGCGCCGG
TGGCAATTCATCCTTGGCTTATGAAGATGTTCCGGAAATGTGGTTGCAGTACCAAGACAT
TGTTATTAGTCCTTTTGAGTTTCATCTAGTTGAAAGCACTGGTGTGCTGATGACACTCTA
TGTGGAGACTGAAATCTTCATCAGATTTCTTTTGTGTGTACTTATTCAAATAAGGCACAC
CCTGATGATCTCAGAGATCGGAGTCGGGCATGGTTGAGACACCATAGGCCTGTCCTTCCT
TACCTGTTGTGATTTGTGAATGTATCTGGTAATTAACTCAGAGGTGGTTGA

Homology of Contig U35_4578 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g41720.1	305	4e-105	protein\|nuclear transcription factor Y subunit, putative, expressed
Brachypodium v1_2	None
Arabidopsis v10	None