barSeed - Barley Seed Development Database

Probe CUST_1782_PI390587928

Source Contig U35_6209

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1782_PI390587928	Hv_44K_v2	GATATGTATGCTAGTATTCTGCTGATCATGCCTGTATGCTGCTGATCATACAGTAAAAAA	562	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361005	2223	2e-24	2119 - 2178	100	60 / 60	plus	ABC12587
MLOC	MLOC_40660.1	453	2e-24	232 - 291	100	60 / 60	plus	ABC12587
JLOC1	JLOC1_26566.1	400	8e-25	232 - 291	100	60 / 60	plus
Harvest21	ABC12587	716	3e-25	95 - 154	100	60 / 60	minus	ABC12587
Harvest35	U35_6209	716	3e-25	563 - 622	100	60 / 60	plus

Contig Sequence (716 bp)

>U35_6209 716 Hv_44K_v2
GAAGATTATTGAGGAATCTCCCGTTCGTAAAACAATTGTTTTCTGCAACAAGATTGAGAC
ATGTAGAAAGGTTGAGAACGTGCTGACACGGTTGGACAGGAAAGCAACACAGATAAAGGT
CCTACCGTTCCATGCTGCATTGGACCAGGCGAAACGCATCGCAAACATGAAGGAGTTCCT
GAAGAAGCAGACTACGGACTCGATGTTCCTCGTGTGCACGGACAGGGCGTCACGAGGTAT
CGACTTCACGAACGTGAACCACGTGGTGCTGTTCGACTACCCCCGCGACCCGAGCGAGTA
CGTGCGGAGGGTCGGCAGGACGGCCCGTGGCGCGTCGGGCGACGGCAAGGCTTTCGTATT
CGCGGTGGGCAAGCAGGTGTCCCTTGCCAGGAGGGTGATGGAGAGGAACCTCAAGGGGCA
CCCGCTGCACGACGTCCCGTGCTTCTAGTTCTAGAAGTGGGGGTTATCATGATGCTCCTC
TGCCCCCACAGCTGTAGCAAGTATTTGCAGTAGTATGTATGCTACTATACGCACCGTGTA
TACACACTACTGTCACATGTAGGATATGTATGCTAGTATTCTGCTGATCATGCCTGTATG
CTGCTGATCATACAGTAAAAAAATAAATATGTGTACAATGAGAAGCGCAAGGCGTTTATT
AACATTCAAAAAAAAATGCAAGGCATTCATGTTCCGATGAAAAAAAAAAAAAAAAA

Homology of Contig U35_6209 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g01830.1	642	1e-87	protein\|DEAD-box ATP-dependent RNA helicase, putative, expressed
Brachypodium v1_2	Bradi4g13830.1	671	2e-92
Arabidopsis v10	AT3G06980.1	781	8e-68	DEA(D/H)-box RNA helicase family protein \| chr3:2201531-2204662 FORWARD LENGTH=781