barSeed - Barley Seed Development Database

Probe CUST_17822_PI390587928

Source Contig U35_4590

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17822_PI390587928	Hv_44K_v2	GCATACTGTATTAATAATAATGGCTGGAGTTTTATCGATGCTCCGCATATGTTCTGTTAA	1324	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70188.3	1369	2e-24	31 - 90	100	60 / 60	minus	ABC13892
MLOC	MLOC_70188.1	3426	2e-24	184 - 243	100	60 / 60	minus	ABC13892
MLOC	MLOC_70188.2	1498	2e-24	73 - 132	100	60 / 60	minus	ABC13892
JLOC1	JLOC1_46569.2	2191	8e-25	2061 - 2120	100	60 / 60	plus
JLOC1	JLOC1_46569.1	1750	8e-25	1620 - 1679	100	60 / 60	plus
JLOC1	JLOC1_46570.1	3248	8e-25	179 - 238	100	60 / 60	minus
Harvest35	U35_4590	1400	3e-25	1325 - 1384	100	60 / 60	plus

Contig Sequence (1400 bp)

>U35_4590 1400 Hv_44K_v2
GCGGAAGTGGTGTTCTATGGTAGGCTCAGACAATTTCTCTCAGCAGTACTCTGAAGTTCC
CATGGAATGCCATGGTTCTATACAATCACACATGAGAATGGCAACAACAATGTAGCGATG
TATGACCCTTCGCTAAACAAATGGCACCACCCTTCTGTTCCCCTTGCTCCTGCAAACATA
GTAATGCCAGTGGCATCTGCAGGTGGCCTTGTTTGCTTATTGGATCTTAGCCACAGGAAC
TTCTACATATGCAACCCTCTTACACAATCACTAAAGGAAATTCCTCCCAGGTCAGTTCAG
GCATGGTCAAGAGTGTCAGTAGGGATGGTGCTGAATGGAAGAGCTCCTAATGAGGGTTAC
AAAGTGATGTGGTTGCGAAATGATGGAAATCATGAGGTCTACGACTCTCTGCAGAATATG
TGGTTTCAGCCAGGCGAGTTTCCTCCAAGCATCAAGCTCCCACTTGCTCTAAATTTCAGG
TCACAGCCAGTCGCGGTTGGCAGCACACTGTACTTCATGTGCTCAGAACCCGAGGGTGTG
TTGTCATATGATGTAAGCACCGGGACTTGGATTCATTTCATCATCCCGCTGCCGCTGCAT
CTGACTGACCACACACTTGCCGAGTTCCAGGGGAAGATCATGCTTGTGGGCCTGCTGTGC
AAGAACGCAGCGACCTGCGTCTGCATCTGGGAGTTGCAGAAGATGACTCTCCTCTGGAAG
GAGGTGGACAGAATGCCAAATATCTGGTGCTTAGAATTCTACGGTAAGCACATGAGGATG
ACCTGCCTGGGCAACAGCGGCTTGCTCATGCTCTCCTTGAAGGCGAAGCGAATGAACCGC
CTCGTGATGTACAACCTTGTGAGCAAGGAGTGGCAGAAGGTACCTGATTGCATGCTCCCT
TGCAGCCGCAAAAAGCAGTGGATAGCATGTGGCGCGGCATTCGGTCCGTGCCCCTCTGCC
TCGCCCTGACCGGTTCTTAGCAAAGGTTGACGTTGTCATTTCATTTTGTTATACGTTTCT
GTGTCGTTGTGACTTGGCGAGAAGGTTATCTGTTGTGTACAAATTCAATGCCAAAGCGGT
TGTTTTCGTTACTTACTGAAGCAATCGGACCGTTCTGTTGTTACTGTCAGTTCTGTCACC
TGCGGGAATTTGTGTCGGTGCAATTGCAACTGATCGGTTGAGCTGAATCCGGTAAGGTTG
ATGTGATCAAAAGGTCGAAAGAGCAGACATCTGTTGGGTCTTAAAACTTCTATTTGTTCC
GTTATTCTGTCTTGTTCAGCATGTAATATTTGTACTACATCTTGGGTCATCTCCCCAGAA
CTGAGCATACTGTATTAATAATAATGGCTGGAGTTTTATCGATGCTCCGCATATGTTCTG
TTAAAAAAAAAAAAAAAAAA

Homology of Contig U35_4590 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g69940.1	444	0.0	protein\|OsFBX32 - F-box domain containing protein, expressed
Brachypodium v1_2	Bradi2g59200.1	446	0.0
Arabidopsis v10	AT1G27340.1	467	8e-144	Galactose oxidase/kelch repeat superfamily protein \| chr1:9495741-9497857 FORWARD LENGTH=467