barSeed - Barley Seed Development Database

Probe CUST_17820_PI390587928

Source Contig U35_4592

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17820_PI390587928	Hv_44K_v2	GAATCCTATAAATCTGATGACGACCGGAAAAGGTGATGACCATTCAGATTTAACTGCCTC	1256	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357129	2410	3e-22	1282 - 1340	98	59 / 60	plus	ABC12141 ABC12142
MLOC	MLOC_61053.1	1860	3e-22	1446 - 1504	98	59 / 60	plus	ABC12141
JLOC1	JLOC1_39860.2	1782	1e-22	1204 - 1262	98	59 / 60	plus
JLOC1	JLOC1_39860.1	2050	1e-22	1472 - 1530	98	59 / 60	plus
Harvest21	ABC15228	693	3e-25	634 - 693	100	60 / 60	plus
Harvest35	U35_4592	1316	3e-25	1257 - 1316	100	60 / 60	plus

Contig Sequence (1316 bp)

>U35_4592 1316 Hv_44K_v2
GGTTCTTTGCCTGACGACACCCAAACCTGNAAGCGAACCCACGCTGTTAGCCGACCCGTC
CACTGCTGCTCCGGCCAGCCATGAGGGTCCTCGCGCTCCTCCTCTTACTATGGATCTCCG
CCGCTGCCGCTGCATCCGCGCCGCCGCTCGAGACCCTCGGCATCCCTCCGCAAGATGAGG
CGTACTACAGGGGCGGCGTGATCAAGTGCAAGGACGGGTCGGGCAAGTTCACCAGGGATC
AGCTCAACGACGACTTCTGCGACTGTCCCGACGGCACCGACGAGCCAGGGACATCTGCCT
GCCCGGAGGCGAAATTCTACTGCAAGAATGCCGGACATTCTCCAATCACCATCTTCTCGT
CGCGAGTGAATGATGGTATATGCGATTGTTGTGATGGGAGTGATGAATACGGTAGCAATG
GCACTTGTAAGAATACATGCTGGGAAGCTGGGAAGGCGGCGAGGGAGAAGTTAAAGAAGA
AGGTAGCTACATATAAAAGTGGTGTCGTTATTCGGAATCAGGAAGTTGAAAAGGCAAAAT
TGGCAATTGCTAAAGATGAAGCAGAGTTAACAAAACTGAAGGGTGAAGAGAAGATACTCC
AGGGGCTTGTCGACAAGCTCAAAGAGCAAAAGAGATTAATAGAAAAGGCGGAGGAAGAGG
AGCGCCTAATAAAAGAGAAGGAAGAAAAGAGAATTAAAGAAGAAGCTGAAAAGCAAGCTG
CTGAGGAAAAGAAAGCATCTGATGCCTCTCAGGAAACAGATTCTCAGGACACTGATGAGA
AGTCACAAGAAGGTGAAAGCAAGGTAGCTGAACATCATGATGGAGATGTCACGGACCATG
ACCATCACTCACCGGAAGGCCAGACATCTGTTGAAGAGCCTGACATTAAAGCTGGAACTG
GAGATGATGCACCACCGGTGGAGACATCTGCAGTACCTACAGATGAGCAGGACCCTACTT
CTGCCGACTCTGAAGGTTTGTCAAAGGAGGAATTGGGTCGTCTGGTGGCTTCTCGCTGGA
CTGGAGAAAATGTAGATGATGTTGGTAAAAGCGATAAAAAGGGCCATGAGGATGAGATGG
ATATACCAGAACCTGCAGAAGAAGCATTTGAAGATGAGCATGATATACCAGAACCTGTAG
AAGAAAATTATGCTGGCTATCATTCAGAAGTTGAGGATGATAGGCACAAATTTGAAGACG
AAGAGTTGTCTAATATATCAGATGATGAATATGTTGATGATCATGAAGAACCTGATGAAT
CCTATAAATCTGATGACGACCGGAAAAGGTGATGACCATTCAGATTTAACTGCCTC

Homology of Contig U35_4592 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g16970.2	599	4e-172	protein\|glucosidase II beta subunit-like domain containing protein, expressed
Brachypodium v1_2	Bradi2g10540.2	607	0.0
Arabidopsis v10	AT5G56360.1	647	8e-87	\| Symbols: PSL4 \| calmodulin-binding protein \| chr5:22823586-22827950 REVERSE LENGTH=647