barSeed - Barley Seed Development Database

Probe CUST_17818_PI390587928

Source Contig U35_4594

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17818_PI390587928	Hv_44K_v2	GTAGTTGTGGTATTGTTAAATCCTCGGATGCAATATTTGTTTGGCAGGTCTTTACTAAAA	1554	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.275	1.425	1.071	0.874	0.520	0.321
Raw	91.896	153.200	105.740	129.828	28.182	18.553

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_32788.1	1982	2e-24	1302 - 1361	100	60 / 60	minus	ABC10706
MLOC	MLOC_32788.2	1494	2e-24	815 - 874	100	60 / 60	minus	ABC10706
MLOC	MLOC_32788.5	1759	2e-24	1089 - 1148	100	60 / 60	minus	ABC10706
Harvest21	ABC10706	1618	3e-25	1555 - 1614	100	60 / 60	plus	ABC10706
Harvest35	U35_4594	1618	3e-25	1555 - 1614	100	60 / 60	plus

Contig Sequence (1618 bp)

>U35_4594 1618 Hv_44K_v2
TGCAAGACCATCCTGTGACCTAACCTAATACTGTTGATTTGTGTATATGTGTTTCTTGGA
TCAGGCCTTGCTGATGAAAGCGACGATGGACTCCATATTCACCACCTCCTTCGGCGTGGA
CCTCGCCACGCTGTCGGGGTCGGACGAGGGGAGGTGCTTCGCCGCGTCATTCGACGACGC
CAGCGAGTTCATCCTGCTCCGCTACGTCGATGCGTTCTGGAAGGTGTCGAGGTTCCCCAA
CGTCGGCGTCGAGGCGGCGCTCAGGCACAGGATCAAGGTCGTCGACGAGTTCGTCTACAA
GCACATCCGTGCCAAGGCATAGGAGATGTCGGCTGGCGCCAAGGCACACGACGCTGGGTC
AAAGGATGATCTGCTGTCCAGATTCATATTGGCGACCAACAGCGACACGGGGAAGGTGGA
TTACAAGTACCTGAGGGACATCATACTGAACATCGTCATGGCCGGCAAGGTCACGACCAC
CGAAGCGCTTGCTTGGTTCCTTTACATGATGTGCAAGCACCCGGAGGTCCAGGAGAAGAT
AAGCAAGGAGGCCGCCGACGCCGGCGAGGCCACGTCGTCCATCGACGACTTCTCCTACAG
CCTCACTCACGAAGTGCTAAACAAGATGCACTACCTGCACGCCGCCCTGACGGAGACGCT
CCGGCTGTACCCTTCGCTCCCGCTGGATAACAAGGAGTGCTTCTCAGACGACGTTCTGCC
CAACGGCTTCAACGTCGGCAAGGGAGACATCGTGTTCTACGCCCCTACGCCATGGGAAGG
ATGGAGCGGCTGTGGGGCGAGGATGCCGTTGTCTTCCTTCCTGAAAGATGACTCGACGAG
CGCGGCGAGTTCCTACCGGAGAGCCCTTTCGAGTTCATCGCCCGTCTCCGTGGGGTTATC
CGGCTCATCTCCGGTGACTATGTCATCGGTGTGGTTGCCACGCTGGATAATAACAACACT
CGCTCATCGTTCGCTCACCTGAGTCTTTGGTTGAGGGCTTGACGCCCTCCCGCGGTCCTG
CCGCCGCTCTATGTGTCGGCATCGACGCCGCACTCCACATGTTCTTTGACAAAGGAAATG
ATGAACACCGGCATCACCTGTCTCCCTGTCTGGCAACTGTAGCAAGTTTCGTTGACCAGA
ACCACCCCTCCAGCAGCAAAGTTGTCATCCGCTCGCTCGTTCTGTCTTTCTTATTTTATT
TTTACATCCTTGTCACTATATTGCTCCGTGTTGCTATTGTTGTATGAATTGGCCTGTTGT
TGTTCTAACAATAGAAGTGAGCTGCATATTTTTTTTCAATAAAGTTGATTTGTTTGCAGA
TTCTTGTATGGGCAGAAGAAAGATAGAATTGACTTTGCGTATAGACTATCCTATGGATGT
CGATGGCTATCACCGGCCAAAGGAGTGTGACGCCAGATGTTGTAGAGCATTAGCGAGGAG
CTCCCGGACGAAGATGGCGGTGGCTAATGAGCACAGTCTACTCGTTGAGGAGGTCATACA
GATTCATGTGCATTCTTGGTTTTAGAAGAAACTGGACTGGTTTGATTTGATTCAGTAGTT
GTGGTATTGTTAAATCCTCGGATGCAATATTTGTTTGGCAGGTCTTTACTAAAATGGG

Homology of Contig U35_4594 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g38110.2	416	8e-108	protein\|cytochrome P450, putative, expressed
Brachypodium v1_2	Bradi3g31697.1	518	1e-106
Arabidopsis v10	AT2G45510.1	511	2e-61	\| Symbols: CYP704A2 \| cytochrome P450, family 704, subfamily A, polypeptide 2 \| chr2:18753085-18754944 FORWARD LENGTH=511