barSeed - Barley Seed Development Database

Probe CUST_17817_PI390587928

Source Contig U35_4595

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17817_PI390587928	Hv_44K_v2	TGTATATGTGTTTCTTGGATCAGGCCTTGCTGATGAAAGCGACGACGGACTCCTTATTCA	278	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_27178.1	1386	7e-23	673 - 732	98	59 / 60	plus	ABC10706
JLOC1	JLOC1_18380.1	1386	4e-23	673 - 732	98	59 / 60	plus
Harvest21	ABC10707	1124	3e-25	279 - 338	100	60 / 60	plus
Harvest21	ABC10706	1618	6e-22	42 - 101	97	58 / 60	plus	ABC10706
Harvest35	U35_4595	697	3e-25	279 - 338	100	60 / 60	plus
Harvest35	U35_4594	1618	6e-22	42 - 101	97	58 / 60	plus

Contig Sequence (697 bp)

>U35_4595 697 Hv_44K_v2
GCGGGCGGCCCCGCCACTCTCCCGAGAAAAATCCATCCAAGACCAAGCCCGCGACCAACA
CCCTCACGAGAAGACCGAGCCCGCGACCAGCTACGACTTCTTGATGAGCCCCCCCCCGGG
ACTTCAGCAACAACATCTTCAATCGGAATGCCGCCAAGCTCGCGCACATCGTCTCCAGCA
ATGCAGCTGCGAAGCAACCCATGGACTTCCAGGTCAACCTGGCAGGCTCTGGGTAATTGC
AAGACCATCCTGTGACCTAACCTAACACTGTTGATTTGTGTATATGTGTTTCTTGGATCA
GGCCTTGCTGATGAAAGCGACGACGGACTCCTTATTCACCACCGCCTTCGGCGTGGACCT
CGCCACGCTGTCGGGGTCGGACGACGGGAGGTGCTTCGCCGCGTCATTCGACGACGCCAG
CGAGTTCATCCTACTCCGTTACGTCGATGCATTCTGGAAGGTGTCGAGGTTCCCCAACGT
CGGCGCTGAGGCGGCGCTCAGGCACAGGATCAAGGTCGTCGACGAGTTCATCTACAAGCA
CATCCGTGCCAAGGCAGAGGAGATGTCGGCTCGCGCCAAGGCACACGACGCTGGGTCAAA
GGATGATCTGCTGTCCAGATTCATATTGGCGACCAACAGCGACACCGAGAAGGTGGATTA
CAAGTACCTGAGGGACATCATACTGAACATCGTCATG

Homology of Contig U35_4595 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi3g31697.1	518	9e-52
Arabidopsis v10	None