barSeed - Barley Seed Development Database

Probe CUST_17815_PI390587928

Source Contig U35_4597

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17815_PI390587928	Hv_44K_v2	GGGAGTCCTAGGGACACATTGTAACATCCTATTTTTGCAATATCAGACTAATTTGAAAAA	1032	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.592	1.495	0.952	0.952	0.294	0.357
Raw	108.969	159.852	90.529	142.418	15.361	20.118

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358982	1414	2e-24	1341 - 1400	100	60 / 60	plus	ABC11083
MLOC	MLOC_68564.1	1487	2e-24	953 - 1012	100	60 / 60	plus	ABC11083
JLOC1	JLOC1_45373.1	4014	8e-25	968 - 1027	100	60 / 60	plus
Harvest21	ABC11083	1145	3e-25	1033 - 1092	100	60 / 60	plus	ABC11083
Harvest35	U35_4597	1145	3e-25	1033 - 1092	100	60 / 60	plus

Contig Sequence (1145 bp)

>U35_4597 1145 Hv_44K_v2
GCTCGCTGTGGGCGCCCTACCTCGCCATCCTCCCGCGCCAGACCGACTCCACCATCTTCT
GGTCAGAAGAAGAGCTCTTGGAGATACAAGGAACACAATTACTGAGCACAACGATGGGTG
TGAAAGAGTACGTGCAAAGCGAATTCGATAATGTCGAAGCCGGGATCATAAACGTGAATA
AAGACCTTTTCCCTGGTACGATAACATTTGATGATTTCCTATGGGCGTTCGGAGTACTAA
GGTCGAGGGTTTTCCCGGAGCTCCGTGGAGATAAGCTTGCCCTCATACCATTTGCTGATC
TGATAAATCACAATGGTGATATTACCTCAAAAGAATCGTGTTGGGAGATCAAAGGAAAGG
GATTTTTAGGTAGGGATACTGTGTTCTCTTTGCGGACGCCAGTGGATGTTAAATCTGGAG
AACAGATATATGTTCAGTATGACCTGGACAAGAGTAATGCTGAATTGGCACTTGACTATG
GGTTCACCGAATCAAACTCGTCAAGGGACTCATATACTCTGACGCTGGAGATCTCTGAAT
CTGATCCATTCTATGAAGACAAACTCGACATTGCAGAGCTAAATGGAATGGGGGAGACCG
CATACTTCGATGTCGTCCTCGGTGAATCACTTCCTCCTCAAATGATTACTTACCTGCGAT
TACTTTGCCTTGGGGGAACGGACGCATTTCTCTTGGAAGCCCTCTTTAGAAATAAAGTTT
GGGAGCACCTTGAATTGCCTGTGAGTCGTGATAACGAGGAATCAATATGCCAAGTCATCC
AGAATGCCTGCAAATCTGCCCTTGCTGCCTACCACACCACCATAGAAGAGGATGAAGAGC
TACTGGAGAGAGAAGATCTGCAATCAAGACATCAAATCGCCGTTGAAGTGAGGGTGGGTG
AAAAGAAAGTACTAGAGCAAATCAATGATATTTTCAAGGAGAGGGAGCAAGAATTAGATG
ACCTTGAGTACTACCAGGAAAGGAGGCTCAAGGATCTCGGTTTTATTGGTGACAATGGTG
ACATCATCTTCTGGGAGTCCTAGGGACACATTGTAACATCCTATTTTTGCAATATCAGAC
TAATTTGAAAAAAAATAGGTTCACATAATTAACAAGAGCGATTGAAATAAAAAAAAAAAA
AAAAA

Homology of Contig U35_4597 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g24530.1	496	0.0	protein\|ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi4g30040.1	493	0.0
Arabidopsis v10	AT1G14030.1	482	2e-155	Rubisco methyltransferase family protein \| chr1:4805493-4807440 REVERSE LENGTH=482