barSeed - Barley Seed Development Database

Probe CUST_17802_PI390587928

Source Contig U35_40032

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17802_PI390587928	Hv_44K_v2	ATATAATGCATACTGTATTAATTAAACACAATGCGTTAAGTGCAATACGCCTCCCTGTCG	510	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.712	2.150	1.257	0.767	0.236	0.327
Raw	61.652	124.248	61.756	57.799	5.352	9.685

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57302.8	1718	2e-24	1625 - 1684	100	60 / 60	plus	ABC36317
MLOC	MLOC_57302.2	2524	2e-24	2393 - 2452	100	60 / 60	plus	ABC36317
JLOC1	JLOC1_37118.3	2378	8e-25	2309 - 2368	100	60 / 60	plus
JLOC1	JLOC1_37118.2	2447	8e-25	2378 - 2437	100	60 / 60	plus
JLOC1	JLOC1_37118.1	2250	8e-25	2181 - 2240	100	60 / 60	plus
Harvest21	ABC36317	601	3e-25	511 - 570	100	60 / 60	plus	ABC36317
Harvest35	U35_40032	601	3e-25	511 - 570	100	60 / 60	plus

Contig Sequence (601 bp)

>U35_40032 601 Hv_44K_v2
CTGGCAGGCCGAAAAGAGCAATGTCTTGAGCAGAACTCCTGATGAGACCAGTCTCCAGTT
TGCAGCTAAAAGGGACAGCTCATCCGCGAAGAGCAATGCCTTGAGCAAAACACCTGAGGT
GGACTCTGCTCAGCTTGCAGGTAGAAGGGACAACCCGTCGGAGAAGAACAAACTCTGTTC
CAGCAGCCCCTTCCCAGATTTCCAGGCTATGAAGCAAGCTCCAGCCACAGTTCAGCCTCT
CAGGATTCAAGACTACTGCAAGGATATATTGGCGAGTTCAAAGGGCAGTGGAACTGGCGA
ACCTTTCCTTGGTTTCAAGAGTGTCTTTTCGTTCCTCTGATCTTGTGAGTATCGTGTACA
GGTCTGCTCAATGTTGTGCTCGAAATATGGCACGGTGACCTACCAGAGGCATTAGCTTGA
CAATTTCTGATGATTACTAGTACAGTAGGTTTTATCGTACAGCATTATATGTTGGAACAC
CTTTCTGTGCTGTGTACGAATGGTATGTGGATATAATGCATACTGTATTAATTAAACACA
ATGCGTTAAGTGCAATACGCCTCCCTGTCGCGTAAAAAAAACANAAAAAAAAAAAAAAAA
A

Homology of Contig U35_40032 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None